| Gene: Ppt2 | ID: uc008cde.1_intron_7_0_chr17_34763941_r | SPECIES: mm9 |
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(3) OTHER.mut |
(4) PIWI.ip |
(3) PIWI.mut |
(1) TDRD1.ip |
(20) TESTES |
| GGGCCGCTGTTCCCCGGCCTTTGCAGATCCCAGAGTAGTGAATGGCCGAGGTGATGCTTAAGGGAGATCCTGGGCCTTGGGACAAAGTCCCTTGGGCGCCAAGTTGGGGGCGGGACTTAGGGTGAGCATTGGTGCATGGAGGTGGTAGGTGTTTGTGCCGAGCCATCTGGATGGAGTAAGTTAAAAGTAGCCTTCCCTCATACGGACCAGGAGTAGGAGCGGAGGCCGGAGAGTTGCTTGCTGTGAGTCTGTTGGGAGTGGAGAGGCGTCGTCTCCCTCACGGCCTCTCGTTCCTTCTCAGGTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCGGCTTGGGCT ......................................................................................................................................(((..(((((((.(((......)))..)))))))..)))................((((((.(((.(((.........))).))).))))))............................................................................................................................. ..............................................................................................................................127....................................................................................................230....................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR051940(GSM545784) 18-32 nt total small RNAs (Mov10l+/-). (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................TGCAGATCCCAGAGTAGTGAATGGCC................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 7.00 | 7.00 | 2.00 | 1.00 | 2.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TGCAGATCCCAGAGTAGTGAATGGCCG............................................................................................................................................................................................................................................................................................................... | 27 | 1 | 6.00 | 6.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................CGGAGAGTTGCTTGCTGTGAGTCTGTTGGGAGTG........................................................................................... | 34 | 1 | 6.00 | 6.00 | - | - | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................TACGGACCAGGAGTAGGAGCGGAGGC............................................................................................................................. | 26 | 1 | 5.00 | 5.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................................................................................................................................................................TCATACGGACCAGGAGTAGGAGCGGA................................................................................................................................ | 26 | 1 | 4.00 | 4.00 | - | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................TACGGACCAGGAGTAGGAGCGGAGG.............................................................................................................................. | 25 | 1 | 3.00 | 3.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ....................TTGCAGATCCCAGAGTAGTGAATGGCC................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 3.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................TTGCAGATCCCAGAGTAGTGAATGGCCt............................................................................................................................................................................................................................................................................................................... | 28 | t | 2.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TGCAGATCCCAGAGTAGTGAATGGC................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................GTGCATGGAGGTGGTAGG.......................................................................................................................................................................................................... | 18 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ....................TTGCAGATCCCAGAGTAGTGAATGGCCa............................................................................................................................................................................................................................................................................................................... | 28 | a | 1.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................TACGGACCAGGAGTAGGAGCGGAGGa............................................................................................................................. | 26 | a | 1.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TTGCAGATCCCAGAGTAGTGAATGGC................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................TTGCTGTGAGTCTGTTGGGAGTGGA......................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................GTTGGGAGTGGAGAGGCGTC................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................TGTGAGTCTGTTGGGAGTGGAGAGGC.................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................GGTAGGTGTTTGTGCtgt.............................................................................................................................................................................................. | 18 | tgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..........................................................................................................................TGAGCATTGGTGCAgac.................................................................................................................................................................................................................... | 17 | gac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................TACGGACCAGGAGTAGGAGCGGAG............................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................GGGACTTAGGGTGAGCATTGG........................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................TCCCTCATACGGACCAGGAGTAGGAGC................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................GAGTTGCTTGCTGTGAGTCTGTTGGGA.............................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..........................................................................................................................................................................................................CGGACCAGGAGTAGGAGCGGA................................................................................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................TGCAGATCCCAGAGTAGTGAATGGCCGA.............................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................TTTGCAGATCCCAGAGTAGTGAATGGCC................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................GCGGGACTTAGGGTGAGCAT.............................................................................................................................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................ATACGGACCAGGAGTAGGAG.................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TTGCAGATCCCAGAGTAGTGAATGGCCG............................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................TACGGACCAGGAGTAGGAGCGtagg.............................................................................................................................. | 25 | tagg | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................TCATACGGACCAGGAGTAGGAGCGG................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GCATGGAGGTGGTAGGTG........................................................................................................................................................................................................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................TGAGTCTGTTGGGAGTGGAGAGGg.................................................................................... | 24 | g | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| GGGCCGCTGTTCCCCGGCCTTTGCAGATCCCAGAGTAGTGAATGGCCGAGGTGATGCTTAAGGGAGATCCTGGGCCTTGGGACAAAGTCCCTTGGGCGCCAAGTTGGGGGCGGGACTTAGGGTGAGCATTGGTGCATGGAGGTGGTAGGTGTTTGTGCCGAGCCATCTGGATGGAGTAAGTTAAAAGTAGCCTTCCCTCATACGGACCAGGAGTAGGAGCGGAGGCCGGAGAGTTGCTTGCTGTGAGTCTGTTGGGAGTGGAGAGGCGTCGTCTCCCTCACGGCCTCTCGTTCCTTCTCAGGTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCGGCTTGGGCT ......................................................................................................................................(((..(((((((.(((......)))..)))))))..)))................((((((.(((.(((.........))).))).))))))............................................................................................................................. ..............................................................................................................................127....................................................................................................230....................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR051940(GSM545784) 18-32 nt total small RNAs (Mov10l+/-). (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................................CGGAGAGTTGCTTGCTGTGAGTCTGTTG................................................................................................. | 28 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............GGCCTTTGCAGATCCCAGAGTAGTGAA..................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................GAGAGTTGCTTGCTGTGAGTCTGTTGGGA.............................................................................................. | 29 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ................................................................................................................................................GTAGGTGTTTGTGCCGAGCCATCTGGA.................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................GGCCGGAGAGTTGCTTGCTGTGAGTCT..................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....GCTGTTCCCCGGCCTTTGCAGATCCCA............................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................TAGGTGTTTGTGCCGAGCCATCTGGAac.................................................................................................................................................................................... | 28 | ac | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................GCCTTTGCAGATCCCAGAGTAGTGAA..................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............GGCCTTTGCAGATCCCAGAGTAGTGA...................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................GGTGTTTGTGCCGAGCCATCTGGATGGAG............................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............CGGCCTTTGCAGATCCCAGAGTAGTGA...................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................GAGTAGTGAATGGCCGAGGTGATGCTTA................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................TGCCGAGCCATCTGGATGGAGTAAGTTA........................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................TCCCTCACGGCCTCTCGTTCCTTCTCA................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................CGGAGAGTTGCTTGCTGTGAGTCTGTTGGGA.............................................................................................. | 31 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................CCTCACGGCCTCTCGTTCCTTCTCA................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................GTGCCGAGCCATCTGGATGGAGTAAGTTAA....................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................TCCCTCACGGCCTCTCGTTCCTTCTCAa................................................... | 28 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TGTTCCCCGGCCTTTGCAGATCCCA............................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................GGAGAGTTGCTTGCTGTGAGTCTGTTGGGA.............................................................................................. | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............CGGCCTTTGCAGATCCCAGAGTAGTGAA..................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |