(8)
OTHER.mut
(1)
OVARY
(3)
PIWI.ip
(4)
PIWI.mut
(27)
TESTES

Sense strand
GCCGGGCTGAGGGCGACTTTCGAGGGCCCCCCCGTGGCTCCTGGATCCAGGTGAGCAGGGGCCCCTGGGGCGGGGACGCCATCGGTCATTTAAATGCATAAGTAAAGGTGGGGAGTGGGAAGAATTCTTGGGGTTCAGGAGAAAAATCCCAAGGGGGAAAGACTTGTCTTTCAAACACCTGACAGCCAATGGGAGTGTGGACTGGGGCCAGCGCAAGAGGGCCACTGTGTGGGGGAGGGGAATGGCCAAC


Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
.............................................................................................................................................................................................TGGGAGTGTGGACTGGGGCCAGCGC.................................... 25 1 15.00 15.00 2.00 7.00 - 1.00 2.00 - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................CAGCCAATGGGAGTGTGGACTGGGGC.......................................... 26 1 9.00 9.00 4.00 1.00 - 1.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGGGAGTGTGGACTGGGGCCAGC...................................... 23 1 5.00 5.00 - - - 1.00 1.00 3.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGGGAGTGTGGACTGGGGCCAGCG..................................... 24 1 5.00 5.00 - - - 2.00 - 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
...................................................................................................................................................................................TGACAGCCAATGGGAGTGTGGACTG.............................................. 25 1 5.00 5.00 1.00 - - 1.00 - - - - 1.00 - - - - - - - 1.00 - - 1.00 - - - - - - - -
...................................................................................................................................................................................TGACAGCCAATGGGAGTGTGGA................................................. 22 1 4.00 4.00 1.00 1.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................CATAAGTAAAGGTGGGGAGTGGGA.................................................................................................................................. 24 1 4.00 4.00 1.00 - - - 3.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................TGACAGCCAATGGGAGTGTGGACT............................................... 24 1 3.00 3.00 1.00 - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................TGACAGCCAATGGGAGTGTGGAC................................................ 23 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGCATAAGTAAAGGTGGGGAGTGG.................................................................................................................................... 24 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGGGAGTGTGGACTGGGGCCAG....................................... 22 1 2.00 2.00 - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................TAAGTAAAGGTGGGGAGTGGGAAGA............................................................................................................................... 25 1 2.00 2.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................CAGCCAATGGGAGTGTGGACTGGG............................................ 24 1 2.00 2.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................AATGGGAGTGTGGACTGGGGCCAGCGC.................................... 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................AGAAAAATCCCAAGGGGGAAAGA........................................................................................ 23 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................TGACAGCCAATGGGAGTGTGGACTGG............................................. 26 1 2.00 2.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................GGGGAGTGGGAAGAATTCTTt........................................................................................................................ 21 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.....................................................................................................................................................................................................TGGACTGGGGCCAGCGCAAGAGGG............................. 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TGGACTGGGGCCAGCGCAAGAGGGCCACTa....................... 30 a 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGCATAAGTAAAGGTGGGGAGTGGG................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.................................................................................TCGGTCATTTAAATGCATAAGTAAAGG.............................................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................TTCAAACACCTGACAGCCAATGGGAGT...................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGTGGACTGGGGCCAGCGCAAGAGG.............................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TGGACTGGGGCCAGCGCAAGAGGGCCA.......................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................ACAGCCAATGGGAGTGTGGACTGGGGC.......................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................ATGGGAGTGTGGACTGGGGCCAGCGC.................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................CCCCCGTGGCTCCTcttc............................................................................................................................................................................................................ 18 cttc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................................................................................................................................................................................AGCCAATGGGAGTGTGGACTGGGGCCA........................................ 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGGGAGTGTGGACTGGGGCCAGCGCA................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................AATGGGAGTGTGGACTGGGGC.......................................... 21 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................GTGGGGGAGGGGAATGGCatt. 21 att 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................GTGGACTGGGGCCAGCGCAAGAGGG............................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGGGAAGAATTCTTGGGGTTCAGGAG............................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.....................................................................................................................................................................................................TGGACTGGGGCCAGCGCAAGAGGGCCACT........................ 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGGGAGTGTGGACTGGGGCCAGCGCAA.................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................TAAATGCATAAGTAAAGGTGGGGA........................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................................................TTAAATGCATAAGTAAAGGTGGGGAGT...................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..........................................................................................................................................................................................CAATGGGAGTGTGGACTGGGGC.......................................... 22 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................GCATAAGTAAAGGTGGGGAGTGGGA.................................................................................................................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................TTTAAATGCATAAGTAAAGGTGGGGA........................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................TTTAAATGCATAAGTAAAGGTGGGGAGT...................................................................................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGGGAGTGTGGACTGGGGCCAGCa..................................... 24 a 1.00 5.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................CAGCCAATGGGAGTGTGGACTGGGcc.......................................... 26 cc 1.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
GCCGGGCTGAGGGCGACTTTCGAGGGCCCCCCCGTGGCTCCTGGATCCAGGTGAGCAGGGGCCCCTGGGGCGGGGACGCCATCGGTCATTTAAATGCATAAGTAAAGGTGGGGAGTGGGAAGAATTCTTGGGGTTCAGGAGAAAAATCCCAAGGGGGAAAGACTTGTCTTTCAAACACCTGACAGCCAATGGGAGTGTGGACTGGGGCCAGCGCAAGAGGGCCACTGTGTGGGGGAGGGGAATGGCCAAC


Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
..............................CCCGTGGCTCCTGGATCCAGGTGAGCA................................................................................................................................................................................................. 27 1 2.00 2.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................CTTGTCTTTCAAACACCTGACAGCCA.............................................................. 26 1 2.00 2.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................AAATCCCAAGGGGGAAAGACTTGTCTTTCA............................................................................. 30 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................GAATTCTTGGGGTTCAGGAGAAAAATCCCA................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.................................................................TGGGGCGGGGACGCCATCGGTCATTTA.............................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.......................................................................GGGGACGCCATCGGTCATTTAAATGCA........................................................................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................TGTCTTTCAAACACCTGACAGCCA.............................................................. 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................ACTTGTCTTTCAAACACCTGACAGCCA.............................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
............................................................................................................................TTCTTGGGGTTCAGGAGAAAAATCCCA................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................................................................................................................GTCTTTCAAACACCTGACA.................................................................. 19 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................GACTTGTCTTTCAAACACCTGACAGCCAA............................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...................................................................................................................................................................TTGTCTTTCAAACACCTGACAGCCA.............................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................GCCATCGGTCATTTAAATGCATAAGTAa.................................................................................................................................................. 28 a 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................AAATCCCAAGGGGGAAAGACTTGTCTTTCAAa............................................................................ 32 a 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................GTGGCTCCTGGATCCAGGTGAGCAagg................................................................................................................................................................................................. 27 agg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
................................................................................................................GAGTGGGAAGAATTCTTGGGGTTCA................................................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................GGGGAGTGGGAAGAATTCTTGGGGTTCA................................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................ACGCCATCGGTCATTTAAATGCATAAGTA.................................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
......................GGGCCCCCCCGTGGCTCCTGGATCCAa......................................................................................................................................................................................................... 27 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................CTGACAGCCAATGGGA........................................................ 16 5 0.20 0.20 - - - - 0.20 - - - - - - - - - - - - - - - - - - - - - - -