| Gene: Rxrb | ID: uc008cax.1_intron_4_0_chr17_34172772_f | SPECIES: mm9 |
|
|
(1) OTHER.ip |
(4) OTHER.mut |
(4) PIWI.ip |
(3) PIWI.mut |
(21) TESTES |
| GTGACCAAGGCGTTGAGGGTCCTGGGGCCACCGGGGGTGGTGGCAGCAGCGTGAGTGATGGGATTGATTCTTTCTCTCCTGGGGTGGGGGTTGGGAGAAGGAGTCGGGTATGTTCCATCTCCCCTCTTCCCTTCTTTCAGTCCCTCCTTACCTTGCACTGAACTAAAAGGCCTTTCAATAATCTGAGGTGAGCCAGGTGTAGCGATCCATGCCTATAATGTCAGCACTTGGGAAGGGAGAGACAAGTGGATCTCCATGAGTTCAAGGCCAGCCTGGTATACATAGCAGGTTTCAGGCCAGTCGTGACTACATAGTGAGACTCTCTCTTAGAAAGTCTCGTCTCTGACACGGGGTGAAAGCTCCCTCTTCTCTGCTCCCATTGGACAGTCCCAGACTGGTAGTGGTTTCTATGACTGCCCTGAGAGGAGCCTGGACCGCAGAGGTGGATTGGATCCCGACAGGGAATGAGGGTGTAGAAAGGAGTATAAAACACCTCTCACAAGGAAGGTGTCCCCCCCTTCCCATGCATCTCCCCCCTGTCTCTGCAGCCAAATGACCCAGTGACTAACATCTGCCAGGCAGCTGACAAACAGCTGTT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT1() Testes Data. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACATCTGCCAGGCAGCTGAC........... | 27 | 1 | 6.00 | 6.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAGGAGCCTGGACCGCAGAGGTG......................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................TAGAAAGTCTCGTCTCTGACACGGGG..................................................................................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCGCAGAGGTGGATTGGA.................................................................................................................................................. | 22 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTGACTAACATCTGCCAGGCAGCTG............. | 28 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCAGTGACTAACATCTGCCAGGCA................. | 28 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGCCTGGACCGCAGAGGTGGA....................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TAATGTCAGCACTTGGGAAGGGAGAGA.................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................GAGAAGGAGTCGGatgc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | atgc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGGGTGTAGAAAGGAGTAT................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGAGAGGAGCCTGGACCGCAGAGGT.......................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCGCAGAGGTGGATTGGATCCCGAC........................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAGGAGCCTGGACCGCAGAG............................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCGCAGAGGTGGATTGGATCCC.............................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGACTAACATCTGCCAGGCAGC............... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................ACTTGGGAAGGGAGAGACAAGTGG............................................................................................................................................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................................................................................................................................................................................................................................................................................TTAGAAAGTCTCGTCTCTGACACGGGG..................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAGGAGCCTGGACCGCAGAGGTGGAT...................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCAGTGACTAACATCTGCCAGa................... | 26 | a | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................TAGAAAGTCTCGTCTCTGACACGGGGT.................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACATCTGCCAGGCAGCTG............. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................TGAGTTCAAGGCCAGCCTGGTATttt............................................................................................................................................................................................................................................................................................................................ | 26 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TTGGGAGAAGGAGTggtg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | ggtg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAGGAGCCTGGACCGCAGAGt........................................................................................................................................................... | 24 | t | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCAGTGACTAACATCTGCCAGGCAG................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGTGACTAACATCTGCCAGGCAGCT.............. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................TTAGAAAGTCTCGTCTCTGACACGGGGT.................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGTGACTAACATCTGCCAGGCA................. | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGACTAACATCTGCCAGGCAGCTGACAA......... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCTGCAGCCAAATGACCCAGTGA.................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................GAGAGACAAGTGGATCT......................................................................................................................................................................................................................................................................................................................................................... | 17 | 8 | 0.12 | 0.12 | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GTGACCAAGGCGTTGAGGGTCCTGGGGCCACCGGGGGTGGTGGCAGCAGCGTGAGTGATGGGATTGATTCTTTCTCTCCTGGGGTGGGGGTTGGGAGAAGGAGTCGGGTATGTTCCATCTCCCCTCTTCCCTTCTTTCAGTCCCTCCTTACCTTGCACTGAACTAAAAGGCCTTTCAATAATCTGAGGTGAGCCAGGTGTAGCGATCCATGCCTATAATGTCAGCACTTGGGAAGGGAGAGACAAGTGGATCTCCATGAGTTCAAGGCCAGCCTGGTATACATAGCAGGTTTCAGGCCAGTCGTGACTACATAGTGAGACTCTCTCTTAGAAAGTCTCGTCTCTGACACGGGGTGAAAGCTCCCTCTTCTCTGCTCCCATTGGACAGTCCCAGACTGGTAGTGGTTTCTATGACTGCCCTGAGAGGAGCCTGGACCGCAGAGGTGGATTGGATCCCGACAGGGAATGAGGGTGTAGAAAGGAGTATAAAACACCTCTCACAAGGAAGGTGTCCCCCCCTTCCCATGCATCTCCCCCCTGTCTCTGCAGCCAAATGACCCAGTGACTAACATCTGCCAGGCAGCTGACAAACAGCTGTT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT1() Testes Data. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................................................................................................................................................................................................................TCTCTGCTCCCATTGGACAGTCCCAG............................................................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................AGAGACAAGTGGATCTCCATGAGTTCAAGt............................................................................................................................................................................................................................................................................................................................................ | 30 | t | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................CTACATAGTGAGACTCTCTCTTAg............................................................................................................................................................................................................................................................................. | 24 | g | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................GAGTTCAAGGCCAGCCTGGTATACATA.......................................................................................................................................................................................................................................................................................................................... | 27 | 8 | 0.12 | 0.12 | - | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |