| Gene: Rrp1b | ID: uc008bvt.1_intron_11_0_chr17_32192943_f.5p | SPECIES: mm9 |
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(4) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(18) TESTES |
| TCAGAGAAGGCACAAGAGGAAAAGAAAGAAGCTTTTAGAGAGTGAGAAAGGTGAGCTGCACAGTCTCGGAGCTGAAGGAGGTCGCCTTGCTCACACGGGACTGACAGAGAGGAGGTTTGTTCCTTGAGATAGAGCCGTCTCACATAGCCCAGGTTTCCCTGGAACTCATGAGCGAGCGCTGGGGTGCGATGACAGCAGCCCCGCACCACAGATCCTCTGGGTTCTGTCATTTCCTCTGCAGACACTGGTC .......................................................(((..((((((((((((..((((......))))))))...)))))))).)))............................................................................................................................................... ..................................................51................................................................117................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR037902(GSM510438) testes_rep3. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................TGCTCACACGGGACTGACAGAGAGGA......................................................................................................................................... | 26 | 1 | 13.00 | 13.00 | 2.00 | 2.00 | 2.00 | 4.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................................TGCTCACACGGGACTGACAGAGAGGAG........................................................................................................................................ | 27 | 1 | 6.00 | 6.00 | 4.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGCTCACACGGGACTGACAGAGAGG.......................................................................................................................................... | 25 | 1 | 5.00 | 5.00 | 2.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................CTCACACGGGACTGACAGAGAGGAG........................................................................................................................................ | 25 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................GCTCACACGGGACTGACAGAGAGGA......................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................CACGGGACTGACAGAGAGGAGGagac................................................................................................................................... | 26 | agac | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGCTGCACAGTCTCGGAGCTGAAG............................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....GAAGGCACAAGAGGAAAAGAAAGAA............................................................................................................................................................................................................................ | 25 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TAGAGAGTGAGAAAGGTGAGCTGCAC............................................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TGGAACTCATGAGCGAGCGCTGGGGT................................................................. | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................TTGCTCACACGGGACTGACAGAGAGGA......................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TCACACGGGACTGACAGAGAGGAGGTTT.................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................TTGCTCACACGGGACTGACAGAGAG........................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...GAGAAGGCACAAGAGGAAAAGAAAGAA............................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................ACACGGGACTGACAGAGAGGAGGaga.................................................................................................................................... | 26 | aga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................GAGAGTGAGAAAGGTGAGCTGCACAG........................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................TGCACAGTCTCGGAGCTGAAGG............................................................................................................................................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................AGAGTGAGAAAGGTGAGCTGCACAGT.......................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .CAGAGAAGGCACAAGAGGAAAAGAAAGt............................................................................................................................................................................................................................. | 28 | t | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TAGAGAGTGAGAAAGGTGAGCTtca.............................................................................................................................................................................................. | 25 | tca | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..AGAGAAGGCACAAGAGGAAAAGAAAGA............................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................ATCCTCTGGGTTCTGTCgga................... | 20 | gga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............GAGGAAAAGAAAGAAGCTTTTAGAGAGT............................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................AGAAAGAAGCTTTTAGAGAGTGAGAAt......................................................................................................................................................................................................... | 27 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TTGTTCCTTGAGATgtcc.................................................................................................................... | 18 | gtcc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ............................................................CAGTCTCGGAGCTGAAGGAGGTCGCC.................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......AAGGCACAAGAGGAAAAGAAAGAAGCTT........................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................TTAGAGAGTGAGAAAGGTGAGCTtc............................................................................................................................................................................................... | 25 | tc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................................TTGCTCACACGGGACTGACAGAGAGG.......................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................TTGCTCACACGGGACTGACAGAGAGGAGt....................................................................................................................................... | 29 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..................................TTAGAGAGTGAGAAAGGTGAGCTGC............................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TAGAGAGTGAGAAAGGTGAGCTGCAa............................................................................................................................................................................................. | 26 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................CTCACACGGGACTGACAGAGAGGAGt....................................................................................................................................... | 26 | t | 1.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............AGAGGAAAAGAAAGAAGCTTTTAGAGAG................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................GAAGCTTTTAGAGAtaga............................................................................................................................................................................................................. | 18 | taga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGCTGCACAGTCTCGGAGCTGA............................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................GTTTGTTCCTTGAGATAGAGCCGTC............................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................CACACGGGACTGACAGAGAGGAG........................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................CTCACACGGGACTGACAGAGAGGAGG....................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................GCTCACACGGGACTGACAGAGAGGAt........................................................................................................................................ | 26 | t | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGCTGCACAGTCTCGGAGCTGAA.............................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGCTGCACAGTCTCGGAGCTGAAGG............................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..AGAGAAGGCACAAGAGGAAAAGAAAGt............................................................................................................................................................................................................................. | 27 | t | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .CAGAGAAGGCACAAGAGGAAAAGAAAGA............................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGCTCACACGGGACTGACAGAGA............................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............CAAGAGGAAAAGAAAGAAGCTTTTAGA................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGCTCACACGGGACTGACAGAGAGGAGGa...................................................................................................................................... | 29 | a | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TCACACGGGACTGACAGAGAGGAGGa...................................................................................................................................... | 26 | a | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TGGAACTCATGAGCGAGCGCTGGGG.................................................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................TGCACAGTCTCGGAGCTGAAGGAGGTC....................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TCACACGGGACTGACAGAGAGGAGG....................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGCTCACACGGGACTGACAGAGAGGt......................................................................................................................................... | 26 | t | 1.00 | 5.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................GAACTCATGAGCGAGCGCTGGGGTGC............................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................GTCATTTCCTCTGCAGA........ | 17 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 |
| TCAGAGAAGGCACAAGAGGAAAAGAAAGAAGCTTTTAGAGAGTGAGAAAGGTGAGCTGCACAGTCTCGGAGCTGAAGGAGGTCGCCTTGCTCACACGGGACTGACAGAGAGGAGGTTTGTTCCTTGAGATAGAGCCGTCTCACATAGCCCAGGTTTCCCTGGAACTCATGAGCGAGCGCTGGGGTGCGATGACAGCAGCCCCGCACCACAGATCCTCTGGGTTCTGTCATTTCCTCTGCAGACACTGGTC .......................................................(((..((((((((((((..((((......))))))))...)))))))).)))............................................................................................................................................... ..................................................51................................................................117................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR037902(GSM510438) testes_rep3. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......CACAAGAGGAAAAGAAatac................................................................................................................................................................................................................................ | 20 | atac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................................................................................................................................................................................................CACCACAGATCCTCTG............................... | 16 | 10 | 0.10 | 0.10 | - | - | - | - | - | - | - | - | - | - | - | 0.10 | - | - | - | - | - | - |