| Gene: Cuta | ID: uc008bex.1_intron_2_0_chr17_27075595_r | SPECIES: mm9 |
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(1) OTHER.ip |
(5) OTHER.mut |
(1) OVARY |
(6) PIWI.ip |
(2) PIWI.mut |
(25) TESTES |
| GAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCATGTGAGTTGTCAGTTAGAAACGGAAATCTACCCGGAGGGGCTGAGAGCTTTTTCTGGGAGAAATCTTCCTTTCCCAAGACTTTGTTCCCTTCTTTCTCTGACCTCTTCAGCTATGAATGGAAAGGAAA ....................................................(((((.((((((.....(((........)))....)))))).)))))....(((((((........))))))).................................................... ..................................................51..........................................................................127................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................TGAGTTGTCAGTTAGAAACGGAAATCT................................................................................................... | 27 | 1 | 18.00 | 18.00 | 3.00 | 5.00 | 3.00 | 1.00 | 4.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TGTGAGTTGTCAGTTAGAAACGGAAATC.................................................................................................... | 28 | 1 | 11.00 | 11.00 | 3.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | 1.00 | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGGCAGCCTGCGTCAACCTCATCCCG............................................................................................................................................. | 26 | 1 | 6.00 | 6.00 | - | - | - | - | - | 3.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........TGGCAGCCTGCGTCAACCTCATCCC.............................................................................................................................................. | 25 | 1 | 6.00 | 6.00 | - | - | - | - | - | - | 1.00 | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - |
| .............................................TCCATGTGAGTTGTCAGTTAGAAACGGA........................................................................................................ | 28 | 1 | 5.00 | 5.00 | 2.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TCCATGTGAGTTGTCAGTTAGAAACGGAA....................................................................................................... | 29 | 1 | 4.00 | 4.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTGTCAGTTAGAAACGGAAATCTAC................................................................................................. | 29 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TCCATGTGAGTTGTCAGTTAGAAACGGt........................................................................................................ | 28 | t | 3.00 | 1.00 | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TGTGAGTTGTCAGTTAGAAACGGAAATCT................................................................................................... | 29 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .AGAAGCGTCTGGCAGCCTGCGTCAACC..................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................TAGAAACGGAAATCTACCCGGAGGGGCTG..................................................................................... | 29 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGGCAGCCTGCGTCAACCTCATCCCGC............................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTGTCAGTTAGAAACGGAAATCTA.................................................................................................. | 28 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTGTCAGTTAGAAACGGAAA...................................................................................................... | 24 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..GAAGCGTCTGGCAGCCTGCGTCAACCT.................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .AGAAGCGTCTGGCAGCCTGCGTt......................................................................................................................................................... | 23 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...AAGCGTCTGGCAGCCTGCGTCAACCTCt.................................................................................................................................................. | 28 | t | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTTGTCAGTTAGAAACGGAAAT..................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................TATGAATGGAAAGGttgg | 18 | ttgg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................AGTTGTCAGTTAGAAACGGAAATCTA.................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ................................................ATGTGAGTTGTCAGTTAGAAACGGAA....................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TCCATGTGAGTTGTCAGTTAGAAACGG......................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TGTGAGTTGTCAGTTAGAAACGGAAAT..................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................CAACCTCATCCCGCAGATCACATCCAT............................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................AACGGAAATCTACCCGGAGGGGCTGA.................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........TCTGGCAGCCTGCGTCAACCTCATCCCt............................................................................................................................................. | 28 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................AGTTGTCAGTTAGAAACGGAAATCTAC................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TCTGGCAGCCTGCGTCAACCTaatc................................................................................................................................................ | 25 | aatc | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGGCAGCCTGCGTCAACCTCATCCCa............................................................................................................................................. | 26 | a | 1.00 | 6.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....AGCGTCTGGCAGCCTGCGTC......................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................GAAACGGAAATCTACCCGGAGGGGCTGAGA.................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...............................................................TAGAAACGGAAATCTACCCGGAGGGGCT...................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TGTGAGTTGTCAGTTAGAAACGGAAA...................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....AGCGTCTGGCAGCCTGCGTCAACCTCATC................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGGCAGCCTGCGTCAACCTCATCCCGttt.......................................................................................................................................... | 29 | ttt | 1.00 | 6.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....GCGTCTGGCAGCCTGCGTCAACCTCATCC............................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGGCAGCCTGCGTCAACCTCATa................................................................................................................................................ | 23 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................TTTCTCTGACCTCTTCAGCTATGAA........... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGGCAGCCTGCGTCAACCTC................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTGTCAGTTAGAAACGGAAATCTACCC............................................................................................... | 31 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TCTGGCAGCCTGCGTCAACCTCATC................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..GAAGCGTCTGGCAGCCTGCGTCAACCTC................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGGCAGCCTGCGTCAACCTCATCC............................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................CCATGTGAGTTGTCAGTTAGAAACGGAA....................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..GAAGCGTCTGGCAGCCTGCGTCAACCTCt.................................................................................................................................................. | 29 | t | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................TCCCGCAGATCACATCCATGTGAGTTG....................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTGTCAGTTAGAAACGGAAATC.................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGGCAGCCTGCGTCAACCTCATCCCGCA........................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................AACGGAAATCTACCCGGAGGGGCTGAG................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTTGTCAGTTAGAAACGGAAATCT................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .AGAAGCGTCTGGCAGCCTGCGTCAAC...................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................TTCAGCTATGAATGGAAAGGAcag | 24 | cag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTTGTCAGTTAGAAACGGAAATC.................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................AAATCTACCCGGAGGGGCTGAGAG................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| GAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCATGTGAGTTGTCAGTTAGAAACGGAAATCTACCCGGAGGGGCTGAGAGCTTTTTCTGGGAGAAATCTTCCTTTCCCAAGACTTTGTTCCCTTCTTTCTCTGACCTCTTCAGCTATGAATGGAAAGGAAA ....................................................(((((.((((((.....(((........)))....)))))).)))))....(((((((........))))))).................................................... ..................................................51..........................................................................127................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................CTTCTTTCTCTGACCTCTTCAGCTA............... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................CCTGCGTCAACCTCATCCCGCAGATCA...................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........TCTGGCAGCCTGCGTCAACCT.................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................GATCACATCCATGTGAGTTGTCAGTTAGA.............................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |