(5)
OTHER.mut
(2)
OVARY
(4)
PIWI.ip
(1)
PIWI.mut
(21)
TESTES

Sense strand
ACAGTGCAGAATCCGGATGCAGCTCCTGTAGTACCCCTCTCTACGATCAGGTTAGTAGGAGTCCGGGTCCATGCAGGGCAGGGAGGTGGCAGAGCTGGCAGAGGTCTAGGAGGATTGTGCCAGGAGGATATAGAAAGCGGCTGCAGCTTTATTTATACTAGCGGGGACACGAGGATCTTTAGTCCATCATGAAGCAATTGGATGGAGCTGAGTCTCCCAGTTGCTGGCACGGAAGAGCTTGTTGGCTCTGTCCAGGCCAATGGGCTTGATTCTTTACGAATATTTTAATATGTCAACAGCAGTGCTGAGGTCACCAGTTTCAGAAACTCCCGTTTTCAGCGGGGAGTTTTTGTGGGCATGGGTACTGGTGCTCACGCTGGACGAGCTTGACGAATGCTGGACTGTTTTTTTGACTTCAGGGGGGCCCAGTGGAGATCCTGTCCTTCCTGTACCTGGGCAGTGCCTATCA
................................................................................................................................................................................................................................................................................................................................(((((((((((((.....))))).))))))))..(((.((((((....)))))).)))..................(((((..(((.....))))))))..................................................
...............................................................................................................................................................................................................................................................................................................................320................................................................................................419................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
..........................................................................................................................GGAGGATATAGAAAGCGGCTGCAGC.................................................................................................................................................................................................................................................................................................................................. 25 1 5.00 5.00 - - 5.00 - - - - - - - - - - - - - - - - - - - -
.........................................TACGATCAGGTTAGTAGGAGTCCGG................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 5.00 5.00 3.00 - - - - - - - 2.00 - - - - - - - - - - - - - -
..................................................................................................................TTGTGCCAGGAGGATATAGAAAGCGGCT....................................................................................................................................................................................................................................................................................................................................... 28 1 3.00 3.00 - - 3.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TAGGAGGATTGTGCCAGGAGGATATAGA............................................................................................................................................................................................................................................................................................................................................... 28 1 2.00 2.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................TGACGAATGCTGGACTGTTTTTTTG......................................................... 25 1 2.00 2.00 - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................TGACGAATGCTGGACTGTTTTTTTGAC....................................................... 27 1 2.00 2.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - -
..........ATCCGGATGCAGCTCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 2.00 2.00 - - - - - - 2.00 - - - - - - - - - - - - - - - -
.......AGAATCCGGATGCAGCTCCTGTAGTACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 2.00 2.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................GAGGATTGTGCCAGGAGGA..................................................................................................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - -
.......AGAATCCGGATGCAGCTCCTGTAGTACCt................................................................................................................................................................................................................................................................................................................................................................................................................................................. 29 t 1.00 2.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................................................................................................TGCCAGGAGGATATAGAAAGCGGC........................................................................................................................................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................GAGCTTGACGAATGCTGGACTGTTTTT............................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................TGGCAGAGGTCTAGGAGGATTGTGC............................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................TACGATCAGGTTAGTAGGAGTCCGGG.................................................................................................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................GGCAGAGGTCTAGGAGGATTGTGa............................................................................................................................................................................................................................................................................................................................................................. 24 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................ACGAATGCTGGACTGTTTTTTTGACTT..................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......AGAATCCGGATGCAGCTCCTGTAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................TCTACGATCAGGTTAGTAGGAGTCC..................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................GACGAATGCTGGACTGTTTTT............................................................ 21 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
......CAGAATCCGGATGCAGCTCCTGTAGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................TGGACTGTTTTTTTGACTTCAGGGGGt............................................. 27 t 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................ACGAATGCTGGACTGTTTTTTTG......................................................... 23 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................TAGTAGGAGTCCGGGTCCATGCAGGGC...................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
..............................................................................................................................................................................ATCTTTAGTCCATCATGAAGCAATTGGATG......................................................................................................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - -
..AGTGCAGAATCCGGATGCAGCTCCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TAGCGGGGACACGAGGATCTTTAGTCa............................................................................................................................................................................................................................................................................................ 27 a 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....GCAGAATCCGGATGCAGCTCCTGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
....TGCAGAATCCGGATGCAGCTCCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....GCAGAATCCGGATGCAGCTCCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGAAGCAATTGGATGGAGCTGAG................................................................................................................................................................................................................................................................. 23 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................TACGATCAGGTTAGTAGGAGTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................GAGTCTCCCAGTTGCTGGCACGGAA........................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - -
..AGTGCAGAATCCGGATGCAGCTCCTGc........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 c 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - -
.....................................................................................................................TGCCAGGAGGATATAGAAAGCGGCT....................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................GAATGCTGGACTGTTTTTTTGACTTCAG.................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................GTTAGTAGGAGTCCGGGTCCATGCAGGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................... 31 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........................................TACGATCAGGTTAGTAGGAGTCCGGGT................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................................................TAGTAGGAGTCCGGGTCCATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TAGGAGGATTGTGCCAGGAGGATATA................................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 -
.....................................................................................................................TGCCAGGAGGATATAGAAAGCGGCTGC..................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................TTGACGAATGCTGGACTGT................................................................ 19 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................TGGTGCTCACGCTGGACGAGCTTGAC.............................................................................. 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................TGGACGAGCTTGACGAATGCTGGACT.................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................TGACGAATGCTGGACTGTTTTTTT.......................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00
......................................................GTAGGAGTCCGGGTCCATGCAGGGC...................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................TGGACTGTTTTTTTGACTTCAGGGGGGC............................................ 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................TGGACTGTTTTTTTGACTTCAGGGGG.............................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................GAGGATTGTGCCAGGAGGAaa................................................................................................................................................................................................................................................................................................................................................... 21 aa 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -
..................................................GTTAGTAGGAGTCCGGa.................................................................................................................................................................................................................................................................................................................................................................................................................. 17 a 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - -
..........................................................................................................TAGGAGGATTGTGCCAGGAGGATAT.................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................TGCAGGGCAGGGAGGTGG............................................................................................................................................................................................................................................................................................................................................................................................ 18 5 0.20 0.20 - - - - - - - - - 0.20 - - - - - - - - - - - - -

Antisense strand
ACAGTGCAGAATCCGGATGCAGCTCCTGTAGTACCCCTCTCTACGATCAGGTTAGTAGGAGTCCGGGTCCATGCAGGGCAGGGAGGTGGCAGAGCTGGCAGAGGTCTAGGAGGATTGTGCCAGGAGGATATAGAAAGCGGCTGCAGCTTTATTTATACTAGCGGGGACACGAGGATCTTTAGTCCATCATGAAGCAATTGGATGGAGCTGAGTCTCCCAGTTGCTGGCACGGAAGAGCTTGTTGGCTCTGTCCAGGCCAATGGGCTTGATTCTTTACGAATATTTTAATATGTCAACAGCAGTGCTGAGGTCACCAGTTTCAGAAACTCCCGTTTTCAGCGGGGAGTTTTTGTGGGCATGGGTACTGGTGCTCACGCTGGACGAGCTTGACGAATGCTGGACTGTTTTTTTGACTTCAGGGGGGCCCAGTGGAGATCCTGTCCTTCCTGTACCTGGGCAGTGCCTATCA
................................................................................................................................................................................................................................................................................................................................(((((((((((((.....))))).))))))))..(((.((((((....)))))).)))..................(((((..(((.....))))))))..................................................
...............................................................................................................................................................................................................................................................................................................................320................................................................................................419................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
.............................................................................................................................................................................GATCTTTAGTCCATCATGAAGCAATTGGA........................................................................................................................................................................................................................................................................... 29 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................GAGCTTGACGAATGCTGGACTGTTTTTT........................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
.......................................................................................................................................AGCGGCTGCAGCTTTATTTAT......................................................................................................................................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................ACCAGTTTCAGAAACTCCCGTTTTCA................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTCCTTCCTGTACCTGGttc............. 23 ttc 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -
.........................................................TCCGGGTCCATGCAgggc.......................................................................................................................................................................................................................................................................................................................................................................................................... 18 gggc 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - -
...............................................................................................................................................................................................AAGCAATTGGATGGAGCTGAGTCTCCC........................................................................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................AACAGCAGTGCTGAGGTCACCAGTTTCA................................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -