| Gene: 1600002H07Rik | ID: uc008ava.1_intron_7_0_chr17_24357256_r | SPECIES: mm9 |
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(1) OTHER.mut |
(1) OVARY |
(5) PIWI.ip |
(15) TESTES |
| GGCAGCGGCAGTTGGAGCGGAGCCTGCGCGTTTCCAGGAGGCTGCTGCAGGTCTGGTACGCGGACCCAGGACCTCCTGGCCAGTCCCTCCTCGGACCATCAGGATTATGCAGAGTCCCAGGGCCTAGAAGGCCAAATACAAATGCATGCTTTTAGACTCCGGTTGCCATTGCTATCCTTACCCCTTATCCAGGGTCTGAGGCTGGGAATCTGCTTAGGGATAGAATGTTTGGACCATACCATGGCTGCCCTGTCTTTGCAGGGAACCAGCCAGGACCCCATCTCCAGTTCCAGAAACCAAAGAAGAGGACC ...............................................................................................................................................(((.(((..((...(((((....((((.(((((((((.......(((..(((.....))).))).......))))))))))))).)))))...))....))))))............................................................... ............................................................................................................................................141............................................................................................................252......................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475281(GSM475281) total RNA. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................................TAGAATGTTTGGACCATACCATGGCTGC............................................................... | 28 | 1 | 7.00 | 7.00 | 3.00 | - | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................TAGAATGTTTGGACCATACCATGGCT................................................................. | 26 | 1 | 4.00 | 4.00 | 1.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............GGAGCGGAGCCTGCGgc......................................................................................................................................................................................................................................................................................... | 17 | gc | 3.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 |
| ................................................................................................................................................................................................................................................ATGGCTGCCCTGTCTTTGCAG.................................................. | 21 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................TAGAATGTTTGGACCATACCATGGCTG................................................................ | 27 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................ATAGAATGTTTGGACCATACCATGGCT................................................................. | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............TGGAGCGGAGCCTGCGgct........................................................................................................................................................................................................................................................................................ | 19 | gct | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................CTGCTGCAGGTCTGGTACGCGGA....................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................................................................................................................................................................TATCCAGGGTCTGAGGCTGGGAATCTG................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................CATGCTTTTAGACTCCGGTTGCCATTGC........................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................TCCAGTTCCAGAAACCAAAGAAGAGGACC | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............AGCGGAGCCTGCGgcaa....................................................................................................................................................................................................................................................................................... | 17 | gcaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .................................................................................................................................................ATGCTTTTAGACTCCGGTTGCCATTGC........................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............TGGAGCGGAGCCTGCGgctt....................................................................................................................................................................................................................................................................................... | 20 | gctt | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....GCGGCAGTTGGAGCGGAGCCTGC............................................................................................................................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............GGAGCGGAGCCTGCGg.......................................................................................................................................................................................................................................................................................... | 16 | g | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................TAGAATGTTTGGACCATACCATGGCTtc............................................................... | 28 | tc | 1.00 | 4.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TCAGGATTATGCAGAGTCCCAGGGCCT.......................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| GGCAGCGGCAGTTGGAGCGGAGCCTGCGCGTTTCCAGGAGGCTGCTGCAGGTCTGGTACGCGGACCCAGGACCTCCTGGCCAGTCCCTCCTCGGACCATCAGGATTATGCAGAGTCCCAGGGCCTAGAAGGCCAAATACAAATGCATGCTTTTAGACTCCGGTTGCCATTGCTATCCTTACCCCTTATCCAGGGTCTGAGGCTGGGAATCTGCTTAGGGATAGAATGTTTGGACCATACCATGGCTGCCCTGTCTTTGCAGGGAACCAGCCAGGACCCCATCTCCAGTTCCAGAAACCAAAGAAGAGGACC ...............................................................................................................................................(((.(((..((...(((((....((((.(((((((((.......(((..(((.....))).))).......))))))))))))).)))))...))....))))))............................................................... ............................................................................................................................................141............................................................................................................252......................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475281(GSM475281) total RNA. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................CCTCCTGGCCAGTCCCT............................................................................................................................................................................................................................... | 17 | 3 | 1.33 | 1.33 | - | 1.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................CTGGGAATCTGCTTAGGGATAGAAt...................................................................................... | 25 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................................................................................CGGACCATCAGGATTATGCAGAGT.................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...............................................................................CCAGTCCCTCCTCGGACCATCA.................................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |