| Gene: Tbc1d24 | ID: uc008aut.1_intron_0_0_chr17_24318341_r | SPECIES: mm9 |
|
|
|
(1) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(15) TESTES |
| CAAGACTGAGTCCATGTTCATGGCTGGAGGCAATGACTGCCTCATCATTGGTGGGCACCTGTTCCCTTCACCCCAGACTGGGTCCTGCCTGTACTCGGAGGGGACTTGTGGGTAGCTGAAGCCTCTGTGCCCAGTCCTTGTTGACTACCAGTAGTAGACATCTCAGTTAAGCAAAGGAAAAGGACCTGGGTTGTTTGGGGTAGAGATAGAAACTAAGGGCTAGCAAGCAAGCGTTAGGTAGGGAGTCAGACCTAGATAAATGTGTGCTTCTAGAGGAACCTCTGTAGTTCGAGGGATCTCTCTCCTGCGATTACTATTTAGCAGACCCTTCAAGGACAAAAACGATGGGGTATCTAGGGAAGGGTGGTTGTTGGAGCAGAAAGACATCTGTTCCCCTGCACATCCCACAGGGGGAGGAGGTGGTCAAGCACTCTACGTTGATGGGGACCTGAATCGAGGG ..........................................................................................................................................................................................................((((.(((..((..((((((..(((((.((((((..((((........))))..))).))).))))).(((((....)))))))))))..))..))).))))............(((((...(((((((............)).)))))..)))))...................................................................................................... .........................................................................................................................................................................................................202...........................................................................................................................................................360.................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................................TAGAAACTAAGGGCTAGCAAGCAAGCGT.................................................................................................................................................................................................................................. | 28 | 1 | 5.00 | 5.00 | - | - | - | 1.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTGATGGGGACCTGAATCGAG.. | 25 | 1 | 4.00 | 4.00 | 1.00 | - | - | - | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................TCAAGGACAAAAACGATGGGGTATCTA........................................................................................................ | 27 | 1 | 4.00 | 4.00 | - | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................TAGTAGACATCTCAGTTAAGCAAAGGA.......................................................................................................................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .................................................................................................................................................TACCAGTAGTAGACATCTCAGTTAAGC................................................................................................................................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTGATGGGGACCTGAATCGAGG. | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................TAGTAGACATCTCAGTTAAGCAAAGGAA......................................................................................................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................TTCAAGGACAAAAACGATGGGGTATCT......................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................GACTTGTGGGTAGCggag.................................................................................................................................................................................................................................................................................................................................................... | 18 | ggag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTGATGGGGACCTGAATCGAGGG | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................GACAAAAACGATGGGGTATCTAGGG..................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACGTTGATGGGGACCTGAAT...... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .......................................................................................................................................................TAGTAGACATCTCAGTTAAGCAAAGG........................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ......TGAGTCCATGTTCATGGCTGGAGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................ATCTAGGGAAGGGTGGTTGTTGGAGC................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TCTAGGGAAGGGTGGTTGTTGGAGCA.................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................TCAAGGACAAAAACGATGGGGTATCTAGG...................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................TGACTACCAGTAGTAGACATCTCAGTTA................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGGGACCTGAATCGAGGGcgct | 26 | cgct | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TCTAGGGAAGGGTGGTTGTTGGAGC................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...........................................................................................TACTCGGAGGGGACTTGTGGGTAGC........................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................GCTAGCAAGCAAGCGTTAGGTAGGGA........................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................AGGAAAAGGACCTGGGTTGTTTGGG..................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................TGGGGTAGAGATAGAAACTAAGGGCTA.............................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGGGACCTGAATCGAGGGag | 24 | ag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCACTCTACGTTGATGGGGACCT.......... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................TAGGGAAGGGTGGTTGTTGGAGCAGA................................................................................ | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................TGTTTGGGGTAGAGATAGAAACTAAGGGC................................................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...GACTGAGTCCATGTTCATGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TAAGGGCTAGCAAGCAAGCGTTAGGTAG........................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGGGACCTGAATCGAGGGcga | 25 | cga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGGGACCTGAATCG.... | 18 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTGATGGGGACCTGAATCGAGGGg | 28 | g | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................TGGGGTATCTAGGGAAGGGTGGTTGTT........................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................TCAAGGACAAAAACGATGGGGTATCT......................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| CAAGACTGAGTCCATGTTCATGGCTGGAGGCAATGACTGCCTCATCATTGGTGGGCACCTGTTCCCTTCACCCCAGACTGGGTCCTGCCTGTACTCGGAGGGGACTTGTGGGTAGCTGAAGCCTCTGTGCCCAGTCCTTGTTGACTACCAGTAGTAGACATCTCAGTTAAGCAAAGGAAAAGGACCTGGGTTGTTTGGGGTAGAGATAGAAACTAAGGGCTAGCAAGCAAGCGTTAGGTAGGGAGTCAGACCTAGATAAATGTGTGCTTCTAGAGGAACCTCTGTAGTTCGAGGGATCTCTCTCCTGCGATTACTATTTAGCAGACCCTTCAAGGACAAAAACGATGGGGTATCTAGGGAAGGGTGGTTGTTGGAGCAGAAAGACATCTGTTCCCCTGCACATCCCACAGGGGGAGGAGGTGGTCAAGCACTCTACGTTGATGGGGACCTGAATCGAGGG ..........................................................................................................................................................................................................((((.(((..((..((((((..(((((.((((((..((((........))))..))).))).))))).(((((....)))))))))))..))..))).))))............(((((...(((((((............)).)))))..)))))...................................................................................................... .........................................................................................................................................................................................................202...........................................................................................................................................................360.................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) |
|---|