| Gene: Tbc1d24 | ID: uc008auq.1_intron_5_0_chr17_24320798_r.3p | SPECIES: mm9 |
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(1) OTHER.mut |
(5) PIWI.ip |
(1) PIWI.mut |
(15) TESTES |
| GTATCAGGAGGGAGGGGGGACTTCTAGGAATAATTTCACCCCATTTCCAACTGGCACCCAGAACCAGGCTGCAAACCTGGCTGGGTAGGTGAGACGCACTTTCTAGGCTGTGTACTAAAATGAAGCCGTGGGGCCACAGAGTAGGGGTAGAGTCAGGACTATGCTCACTGTGGGCTCTGATCCCTCCTCGCTTTTCCCAGGCAGTTTGTGCACTTAGCTGTCCATGCAGAGAACTTCCACTCAGAGATTG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR037902(GSM510438) testes_rep3. (testes) | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................GTAGAGTCAGGACTATGCTCACTGTGGGCTCTGATCCCTCCTCGCTTTTCCC.................................................... | 52 | 1 | 28.00 | 28.00 | - | 28.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TAGCTGTCCATGCAGAGAACTTCCACTC........ | 28 | 1 | 4.00 | 4.00 | - | - | - | - | 2.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - |
| ................................................................................................................................................................................................................TGCACTTAGCTGTCCATGCAGAGAACTT.............. | 28 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................................................................................................................................................................GCACTTAGCTGTCCATGCAGAGAACTTCC............ | 29 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................GCTGTCCATGCAGAGAACTTCCACTC........ | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................AGCTGTCCATGCAGAGAACTTCCACTC........ | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................TGCACTTAGCTGTCCATGCAGAGAACTTCt............ | 30 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................TGCAGAGAACTTCCACTCAGAGATTG | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TGTCCATGCAGAGAACTTCCACTCAGAG.... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGTGCACTTAGCTGTCCATGCAGAGAACT............... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGTGCACTTAGCTGTCCATGCAG..................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .........................................................................................................................................................................................................................CTGTCCATGCAGAGAACTTCCAC.......... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| GTATCAGGAGGGAGGGGGGACTTCTAGGAATAATTTCACCCCATTTCCAACTGGCACCCAGAACCAGGCTGCAAACCTGGCTGGGTAGGTGAGACGCACTTTCTAGGCTGTGTACTAAAATGAAGCCGTGGGGCCACAGAGTAGGGGTAGAGTCAGGACTATGCTCACTGTGGGCTCTGATCCCTCCTCGCTTTTCCCAGGCAGTTTGTGCACTTAGCTGTCCATGCAGAGAACTTCCACTCAGAGATTG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR037902(GSM510438) testes_rep3. (testes) | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................GATCCCTCCTCGCTcaaa.......................................................... | 18 | caaa | 76.00 | 0.00 | 42.00 | - | 17.00 | 16.00 | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTccaa.......................................................... | 18 | ccaa | 4.00 | 0.00 | 1.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTctaa.......................................................... | 18 | ctaa | 3.00 | 0.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTcaga.......................................................... | 18 | caga | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTgaaa.......................................................... | 18 | gaaa | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTcaac.......................................................... | 18 | caac | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................TGATCCCTCCTCGCTaaa.......................................................... | 18 | aaa | 2.00 | 0.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................TGATCCCTCCTCGCTcaa.......................................................... | 18 | caa | 2.00 | 0.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTcgaa.......................................................... | 18 | cgaa | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTcaca.......................................................... | 18 | caca | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTtaaa.......................................................... | 18 | taaa | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTgata.......................................................... | 18 | gata | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................CCCATTTCCAACTGtttt..................................................................................................................................................................................................... | 18 | tttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..............................................................................................................................................................................GATCCCTCCTCGCTtgta.......................................................... | 18 | tgta | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTcata.......................................................... | 18 | cata | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTcaat.......................................................... | 18 | caat | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GATCCCTCCTCGCTccca.......................................................... | 18 | ccca | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |