(7)
OTHER.mut
(5)
PIWI.ip
(2)
PIWI.mut
(27)
TESTES

Sense strand
CAGGCTGAGCCCGGGTGCTGCGGGTGCTGCGTGGCCTGCGGGGCGTGGCGGTGAGTTCGGGGTTGGCGACCTCGCTATTCTCCAGACACCTGCGCCCCCAGGGGCCTGTCCTAAGGTCCCTCTTACCGCTTCCCTCTTCCCACCCGCCTCCTCTGCTCCTCCCTCTCTGCTGTTCCCTACTCTTTATCCCTTCTCTCCTTCCCCTTCCCCACCGTCGGTTCCCGGGACCCAGGTGCACGAATCTTGGTCTGCGTGGACGAGCACCTCGGGTCACGCCTGTCACCCGTACCTTCCCAGCACAGCGACTGCAGATGAGGGAGTCCCCGAGTTGAGTGCCCCAGCGATGG
.....................................................................................................((((((......))))))......................(((((.......(((((.(((..............................................((......))....(((((((.((((......)))).))))).)).))).)))))...)))))............................................................................
.....................................................................................................102.........................................................................................................................................................................274.......................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
....................................................................................................................................................................................................................................................TGGTCTGCGTGGACGAGCACCTCGGG............................................................................. 26 1 15.00 15.00 3.00 3.00 - 3.00 - 2.00 1.00 - - - - - - - - 1.00 2.00 - - - - - - - - - -
.................................................................................................................................................................................................................................................TCTTGGTCTGCGTGGACGAGCACCTC................................................................................ 26 1 7.00 7.00 2.00 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................TGGTCTGCGTGGACGAGCACCTCGG.............................................................................. 25 1 6.00 6.00 1.00 1.00 1.00 3.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................TGGTCTGCGTGGACGAGCACCTCGGGT............................................................................ 27 1 5.00 5.00 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................TGGTCTGCGTGGACGAGCACCTCGGGTC........................................................................... 28 1 5.00 5.00 1.00 - 1.00 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................TCCCAGCACAGCGACTGCAGATGAGG.............................. 26 1 5.00 5.00 3.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................CCCAGCACAGCGACTGCAGATGAGGG............................. 26 1 3.00 3.00 - 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - -
....................................................................................................................................................................................................................................................TGGTCTGCGTGGACGAGCACCTCGGa............................................................................. 26 a 3.00 6.00 - - 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................TGCACGAATCTTGGTCTGCGTGGA.......................................................................................... 24 1 3.00 3.00 - - - - - - - - - - 3.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................CAGCGACTGCAGATGAGGGAGTCCCCGA.................... 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................AGCGACTGCAGATGAGGGAGTCCCCGAG................... 28 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.......................................................................................................................................................................................................................................................................................................AGCACAGCGACTGCAGATGAGGGAGT.......................... 26 1 2.00 2.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TTGGTCTGCGTGGACGAGCACCTCGG.............................................................................. 26 1 2.00 2.00 - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TTGGTCTGCGTGGACGAGCACCTCGGG............................................................................. 27 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................TTCCCAGCACAGCGACTGCAGATGAGG.............................. 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................CGTCGGTTCCCGGGACCg..................................................................................................................... 18 g 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
..........................................................................................................................................................................................................................................................................................................ACAGCGACTGCAGATGAGGGAGTCCCC...................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................TGCTGCGTGGCCTGCGGGGC............................................................................................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................TGTCACCCGTACCTTCCCAGCACAGC............................................ 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................GCACGAATCTTGGTCTGCGTGGACGAGCAt................................................................................... 30 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
................................................................................................................................................................................................................................................................................................................ACTGCAGATGAGGGAGTCCCCGAGTT................. 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................GCACAGCGACTGCAGATGAGGGAGT.......................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................GAGCACCTCGGGTCACGCCTGTCAC................................................................ 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................AGCGACTGCAGATGAGGGAGTCCCCG..................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................TCTTGGTCTGCGTGGACGAGCACCTCGG.............................................................................. 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................TGTCCTAAGGTCCCTCTTACCGCTTC....................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.AGGCTGAGCCCGGGTGCTGCGGGTG................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.AGGCTGAGCCCGGGTGC......................................................................................................................................................................................................................................................................................................................................... 17 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................GCGGGGCGTGGCGGgggt.................................................................................................................................................................................................................................................................................................... 18 gggt 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TTGGTCTGCGTGGACGAGCACCTCGa.............................................................................. 26 a 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........CGGGTGCTGCGGGTGCTGCG............................................................................................................................................................................................................................................................................................................................ 20 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................TGCGGGTGCTGCGTGGCCTGCGGGGCG.............................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................TACCTTCCCAGCACAGCGACTGCAGATG................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.................................................................................................................................................................................................................................................TCTTGGTCTGCGTGGACGAGCACCT................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................TGAGGGAGTCCCCGAGTTGAGTGCCC......... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.............................................................................................................................................................................................................................................................................................................GCGACTGCAGATGAGGGAGTCCCCGAGTTGAGT............. 33 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................CCGTCGGTTCCCGGGggga..................................................................................................................... 19 ggga 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TTGGTCTGCGTGGACGAGC..................................................................................... 19 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................CCCAGCACAGCGACTGCAGATGAGG.............................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
....................................................................................................................................................................................................................................................................................................CCCAGCACAGCGACTGCAGATGAGGt............................. 26 t 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................CCCAGCACAGCGACTGCAGATGAGGGA............................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................TGGTCTGCGTGGACGAGCACC.................................................................................. 21 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........CCGGGTGCTGCGGcgt................................................................................................................................................................................................................................................................................................................................. 16 cgt 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................TCCCAGCACAGCGACTGCAGATGAGGG............................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................CGACTGCAGATGAGGGAGTCCCCGAG................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TGTCCTAAGGTCCCTCTTACCGCTTCCC..................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................ACGAATCTTGGTCTGCG.............................................................................................. 17 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...GCTGAGCCCGGGTGCTGC...................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................CAGCGACTGCAGATGAGGGAGTCCCCaagc.................. 30 aagc 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................TCCTAAGGTCCCTCTTACCGCTTCCCTC................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................AGATGAGGGAGTCCCCGAG................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..............................................................................................................................................................................................................................................GAATCTTGGTCTGCGTGGACGAGCACCTC................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................TCCCAGCACAGCGACTGCAGATGAGGGA............................ 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................ACAGCGACTGCAGATGAGGGAGTCCCCG..................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................GCACAGCGACTGCAGATGAGGGAGTC......................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
...................................................................................................................................................................................................................CCGTCGGTTCCCGGGgg....................................................................................................................... 17 gg 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................TGGCGGTGAGTTCGGGGTTGGCGACC.................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................TGTCACCCGTACCTTCCCAGCACAGCGACT........................................ 30 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................GCTGCGTGGCCTGCGGGGCG.............................................................................................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -

Antisense strand
CAGGCTGAGCCCGGGTGCTGCGGGTGCTGCGTGGCCTGCGGGGCGTGGCGGTGAGTTCGGGGTTGGCGACCTCGCTATTCTCCAGACACCTGCGCCCCCAGGGGCCTGTCCTAAGGTCCCTCTTACCGCTTCCCTCTTCCCACCCGCCTCCTCTGCTCCTCCCTCTCTGCTGTTCCCTACTCTTTATCCCTTCTCTCCTTCCCCTTCCCCACCGTCGGTTCCCGGGACCCAGGTGCACGAATCTTGGTCTGCGTGGACGAGCACCTCGGGTCACGCCTGTCACCCGTACCTTCCCAGCACAGCGACTGCAGATGAGGGAGTCCCCGAGTTGAGTGCCCCAGCGATGG
.....................................................................................................((((((......))))))......................(((((.......(((((.(((..............................................((......))....(((((((.((((......)))).))))).)).))).)))))...)))))............................................................................
.....................................................................................................102.........................................................................................................................................................................274.......................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
...........................................................................................................................................................................................................................................................................................CCGTACCTTCCCAGCACAGCGACTGCA..................................... 27 1 3.00 3.00 - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................GTACCTTCCCAGCACAGCGACTGCA..................................... 25 1 2.00 2.00 - - - - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................TACCTTCCCAGCACAGCGACTGCAGA................................... 26 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................CACCTGCGCCCCCAGGGGCCTGTCCTAa.......................................................................................................................................................................................................................................... 28 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................................................................................................................................................................................................................................................................................TCACCCGTACCTTCCCAGCACAGCG........................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..............................................................................................................................................................................................................................................................................................TACCTTCCCAGCACAGCGACTGCA..................................... 24 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................CTGCAGATGAGGGAGTCCCCGAGTTG................ 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
................................................................................................................................................................CCCTCTCTGCTGTTCCCTACTCTTTA................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................ACCTTCCCAGCACAGCGACTGCAttta..................................... 27 ttta 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................GCGACTGCAGATGAGGGAGTCCCCGAGT.................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................TGAGTTCGGGGTTGGCGACCTCGCTA.............................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................................................................................................GCCTGTCCTAAGGTCCCTC................................................................................................................................................................................................................................. 19 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................GGGACCCAGGTGCACGAATCTTGGT................................................................................................... 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -