| Gene: Rshl2a | ID: uc008ait.1_intron_4_0_chr17_8167006_f.5p | SPECIES: mm9 |
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(5) OTHER.mut |
(2) PIWI.ip |
(1) PIWI.mut |
(1) TDRD1.ip |
(18) TESTES |
| CCGAAGTGCAGCGACTGGAAGAGCAAGAGAGAAGGCACCGAGAAGAAAAGGTGCAGCTCGCTGTCTGTCTGTCTGACTGTCTTGGTCTTTTACTTCCTCTCTCATTTCCCTGCTGGACCCATCCCCTAAGAACAATACCCAGAACTGCCCTCAGCCTCTTGGCCACTTCATACATTATGTCCAAGTTTACATATAGCATACTATGAAACCAGTAATCTTTTTTAATTAATCGTAATTACTTATATGAAGA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR051941(GSM545785) 18-32 nt total small RNAs (Mov10l-/-). (mov10L testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................CTTTTACTTCCTCTCTCATTTCCCTGCTGGACCCATCCCCTAAGAACAATAC................................................................................................................ | 52 | 2 | 23.00 | 23.00 | 23.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..GAAGTGCAGCGACTGGAAGAGCAAG............................................................................................................................................................................................................................... | 25 | 2 | 4.00 | 4.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........GCGACTGGAAGAGCAAGAGAGAAGGCACC................................................................................................................................................................................................................... | 29 | 2 | 3.50 | 3.50 | - | - | 3.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............CTGGAAGAGCAAGAGAGAAGGCACC................................................................................................................................................................................................................... | 25 | 2 | 2.50 | 2.50 | - | 2.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....AGTGCAGCGACTGGAAGAGC.................................................................................................................................................................................................................................. | 20 | 2 | 1.50 | 1.50 | - | - | - | 1.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........CGACTGGAAGAGCAAGAGA............................................................................................................................................................................................................................ | 19 | 2 | 1.50 | 1.50 | - | 1.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TGGAAGAGCAAGAGAGAAGGCACCGAGAAt............................................................................................................................................................................................................. | 30 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................AGGCACCGAGAAGAAAAGa....................................................................................................................................................................................................... | 19 | a | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .CGAAGTGCAGCGACTGGAAGAGCAAG............................................................................................................................................................................................................................... | 26 | 2 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TGGAAGAGCAAGAGAGAAGGCACCGAGt............................................................................................................................................................................................................... | 28 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........GCGACTGGAAGAGCAAGAGAGAAG........................................................................................................................................................................................................................ | 24 | 2 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........GCGACTGGAAGAGCAAGAGAGAAGGCAC.................................................................................................................................................................................................................... | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - |
| .CGAAGTGCAGCGACTGGAAGAGCAAGAGAGA.......................................................................................................................................................................................................................... | 31 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - |
| ...............TGGAAGAGCAAGAGAGAAGGCACCGAGA............................................................................................................................................................................................................... | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................AGCAAGAGAGAAGGCACCGAGA............................................................................................................................................................................................................... | 22 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - |
| ....AGTGCAGCGACTGGAAGAGCAAGA.............................................................................................................................................................................................................................. | 24 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........CAGCGACTGGAAGAGCAAGAGA............................................................................................................................................................................................................................ | 22 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ............GACTGGAAGAGCAAGAGAGAAGGCACC................................................................................................................................................................................................................... | 27 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| ...AAGTGCAGCGACTGGAAGAGCAAG............................................................................................................................................................................................................................... | 24 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - |
| .........AGCGACTGGAAGAGCAAGAGAGAA......................................................................................................................................................................................................................... | 24 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| .....................AGCAAGAGAGAAGGCACCGAGAAGAA........................................................................................................................................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - |
| CCGAAGTGCAGCGACTGGAAGAGCAAGAGAGAAGGCACCGAGAAGAAAAGGTGCAGCTCGCTGTCTGTCTGTCTGACTGTCTTGGTCTTTTACTTCCTCTCTCATTTCCCTGCTGGACCCATCCCCTAAGAACAATACCCAGAACTGCCCTCAGCCTCTTGGCCACTTCATACATTATGTCCAAGTTTACATATAGCATACTATGAAACCAGTAATCTTTTTTAATTAATCGTAATTACTTATATGAAGA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR051941(GSM545785) 18-32 nt total small RNAs (Mov10l-/-). (mov10L testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................TGTCTTGGTCTTTTccca............................................................................................................................................................... | 18 | ccca | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................................................CGCTGTCTGTCTGTCTcca................................................................................................................................................................................ | 19 | cca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |