(6)
OTHER.mut
(4)
PIWI.ip
(2)
PIWI.mut
(23)
TESTES

Sense strand
CTCCGACCCCAACCCCAGGAAACACTATTGCTTTCCCTCTCTGCGAGATTGCCTAGTGAACATTCATAAAGTCGGTAGCGTCACCGTGGTGCTCTTAGCACAATGGTTCTTTCTTGCATCACTCTTTCTGCCTCTCTCTGCTTCCTCCCTGCCTTGCAGTGAGCAGTTTTGCCCATTCTCCCATGATGCCCTGTCTCGCCATGGGACCGGTGATGACTGACTGAAACCTTGGGCAGCAGACATCTTTTCT
.......................................................((((....))))......(((((.......(((((((....((.((....)).)).....))))))).....)))))..((.((((..............)))).))........................................................................................
..................................................51.............................................................................................................162......................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
.........................................................................................................................................................................................................................TGACTGAAACCTTGGGCAGCAGACATC...... 27 1 39.00 39.00 18.00 16.00 2.00 - - 2.00 - - - - - - 1.00 - - - - - - - - - -
.....................................................................................................................................................................................................................TGACTGACTGAAACCTTGGGCAGCAGA.......... 27 1 14.00 14.00 4.00 7.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TGGGACCGGTGATGACTGACTGAAAC....................... 26 1 7.00 7.00 1.00 - - 2.00 1.00 - - 2.00 - - - - - - - - - - 1.00 - - - -
.........................................................................................................................................................................................................................TGACTGAAACCTTGGGCAGCAGACATCT..... 28 1 7.00 7.00 4.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................................TAGTGAACATTCATAAAGTCGGTAGC........................................................................................................................................................................... 26 1 6.00 6.00 2.00 - - 1.00 - - - - 2.00 - - - 1.00 - - - - - - - - - -
.................................................TGCCTAGTGAACATTCATAAAGTCGGTA............................................................................................................................................................................. 28 1 5.00 5.00 2.00 3.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TGACTGAAACCTTGGGCAGCAGACAT....... 26 1 5.00 5.00 2.00 3.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................TAGTGAACATTCATAAAGTCGGTAGCGTC........................................................................................................................................................................ 29 1 5.00 5.00 1.00 - 2.00 1.00 - - - - - - - - - - - - - - - - 1.00 - -
.........................................................................................................................................................................................................TGGGACCGGTGATGACTGACTGAAACC...................... 27 1 4.00 4.00 - - - 2.00 - - - 1.00 - - - - 1.00 - - - - - - - - - -
.....................................................................................................................................................................................................................TGACTGACTGAAACCTTGGGCAGCAGAC......... 28 1 4.00 4.00 1.00 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - -
........................................................TGAACATTCATAAAGTCGGTAGCGTCACC..................................................................................................................................................................... 29 1 4.00 4.00 - 2.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
.................................................TGCCTAGTGAACATTCATAAAGTCGGT.............................................................................................................................................................................. 27 1 4.00 4.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - -
.........................................TGCGAGATTGCCTAGTGAACATTCATA...................................................................................................................................................................................... 27 1 3.00 3.00 - - - - - - - - - - 2.00 - - - - - - - - 1.00 - - -
..................................................................TAAAGTCGGTAGCGTCACCGTGGTG............................................................................................................................................................... 25 1 3.00 3.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - 1.00 -
.......................................TCTGCGAGATTGCCTAGTGAACATTCA........................................................................................................................................................................................ 27 1 3.00 3.00 - 2.00 - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................CCATGGGACCGGTGATGACTGACTGA.......................... 26 1 2.00 2.00 - - - - - - - - - - - - - 2.00 - - - - - - - - -
.....................................TCTCTGCGAGATTGCCTAGTGAACATTCA........................................................................................................................................................................................ 29 1 2.00 2.00 - - - - - - - - - 2.00 - - - - - - - - - - - - -
.........................................TGCGAGATTGCCTAGTGAACATTCATAAA.................................................................................................................................................................................... 29 1 2.00 2.00 - - - - - - 1.00 1.00 - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GACTGACTGAAACCTTGGGCAGCAGA.......... 26 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - -
................................................TTGCCTAGTGAACATTCATAAAGTCGG............................................................................................................................................................................... 27 1 2.00 2.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
......................................................................................................................................TCTCTGCTTCCTCCCTGCCTTGCAGTG......................................................................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................TTGCCTAGTGAACATTCATAAAGTCGGT.............................................................................................................................................................................. 28 1 2.00 2.00 - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
...........................................CGAGATTGCCTAGTGAACATTCATAAAGTC................................................................................................................................................................................. 30 1 2.00 2.00 - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - -
.........................................................................................................................................................................................................................TGACTGAAACCTTGGGCAGCAGACA........ 25 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................ATTGCCTAGTGAACATTCATAAAGTCGGT.............................................................................................................................................................................. 29 1 2.00 2.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................TAGTGAACATTCATAAAGTCGGTAGCGT......................................................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGATGACTGACTGAAACCTTGGGCAGC............. 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
...............................................................................................TAGCACAATGGTTCTTTCTTGCATCAC................................................................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................CTCTGCGAGATTGCCTAGTGAACATTCAT....................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TGATGCCCTGTCTCGCCATGGGACCGGT....................................... 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
................................................................................................................................TGCCTCTCTCTGCTTCCTCCCTGCCT................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGACTGACTGAAACCTTGGGCAGCAG........... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00
.......................................................................................................................................................................................TGATGCCCTGTCTCGCCATGGGACCt......................................... 26 t 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GACTGACTGAAACCTTGGGCAGCAGAC......... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................TGGTTCTTTCTTGCATCACTCTTTCTGC....................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................TCTGCCTCTCTCTGCTTCCTCCCTG................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
..................................................................................................................................................................................................................TGATGACTGACTGAAACCTTGGGCAG.............. 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
.........................TATTGCTTTCCCTCTCTGCGAGATTGCC..................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -
...................................................................AAAGTCGGTAGCGTCACCGTGGTGCT............................................................................................................................................................. 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TGGGACCGGTGATGACTGACTGAAACCTT.................... 29 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - -
.......................................................................................................................................................................................................................ACTGACTGAAACCTTGGGCAGCAGA.......... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - -
......................................................................................................................................................................................................................GACTGACTGAAACCTTGGGCAGCAGACAT....... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................CTGACTGAAACCTTGGGCAGCAGACATC...... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TGGGACCGGTGATGACTGACTGAAACa...................... 27 a 1.00 7.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................TAGTGAACATTCATAAAGTCGGTAGCG.......................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TGCCTCTCTCTGCTTCCTCCCTGCCTT............................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................AACATTCATAAAGTCGGTAGCGTCACCGT................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - -
...........................TTGCTTTCCCTCTCTGCGAGATTGCCT.................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................TAGCGTCACCGTGGTGCTCTTAGCACA.................................................................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................GTGAACATTCATAAAGTCGGTAGCGTC........................................................................................................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................ACTGAAACCTTGGGCAGCA............ 19 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -
...............................................................................................................................................................................................................CGGTGATGACTGACTGAAACCTTGGGC................ 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGACTGACTGAAACCTTGGGCAGCAGAt......... 28 t 1.00 14.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................ACTGACTGAAACCTTGGGCAGCAGACATC...... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................TGAACATTCATAAAGTCGGTAGCGTCA....................................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................CCGGTGATGACTGACTGAAACCTTGGG................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................AGCACAATGGTTCTTTCTTGCATCAC................................................................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TCGCCATGGGACCGGTGATGACTGAC............................. 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - -
........................................................................................................................................................................................................ATGGGACCGGTGATGACTGACTGAAAC....................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................TAAAGTCGGTAGCGTCACCGTGGTGCT............................................................................................................................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................TCTGCGAGATTGCCTAGTGAACATTCg........................................................................................................................................................................................ 27 g 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................TCTGCGAGATTGCCTAGTGAACATTC......................................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................TCTCTGCGAGATTGCCTAGTGAACATT.......................................................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................TGAAACCTTGGGCAGCAGACATCTTTTC. 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -

Antisense strand
CTCCGACCCCAACCCCAGGAAACACTATTGCTTTCCCTCTCTGCGAGATTGCCTAGTGAACATTCATAAAGTCGGTAGCGTCACCGTGGTGCTCTTAGCACAATGGTTCTTTCTTGCATCACTCTTTCTGCCTCTCTCTGCTTCCTCCCTGCCTTGCAGTGAGCAGTTTTGCCCATTCTCCCATGATGCCCTGTCTCGCCATGGGACCGGTGATGACTGACTGAAACCTTGGGCAGCAGACATCTTTTCT
.......................................................((((....))))......(((((.......(((((((....((.((....)).)).....))))))).....)))))..((.((((..............)))).))........................................................................................
..................................................51.............................................................................................................162......................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
......................................................................................................................................................TTGCAGTGAGCAGTcct................................................................................... 17 cct 2.00 0.00 - - - - - - - - - - - - - - - 2.00 - - - - - - -
..............................................................................................................TTCTTGCATCACTCTTTCTGCCTCTCTCT............................................................................................................... 29 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
.....................................................................................................................................................................................................GCCATGGGACCGGTGATGACTGACTGAA......................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................GCTCTTAGCACAATGGTTCTTTCTTGCA.................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................TGCCTAGTGAACATTCATAAAGTCGGTA............................................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.TCCGACCCCAACCCCAGGAAACACTA............................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -