(3)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(26)
TESTES

Sense strand
CAATTAAAGTTTTAGGATCCAGCCTGTCAATTTTACCTCTGCATCTGCATTCTAGTGTCAGTAACGTTACTCTGGCATGTCGTAGCAGCTTCTGACGATTTAAAGTGTTGTGGGAACTGTGTCATATTTTATTAGGGAAGCCCTGTAGTTGAGCGGTGTGTCTAGAACACTGTGTGACTGTAATTTCACCTTGTTTAAAGGTAATGCTGTGGAGTCTTCAAAAAGCCCGTCCTGTTTGGATTACAAATTT
.........................................................................((((..((((.((((.((((.(((((.......))))).))))))))............(((((...))))).......))))..))))........................................................................................
...................................................................68............................................................................................162......................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
........................................................................TGGCATGTCGTAGCAGCTTCTGACGATT...................................................................................................................................................... 28 1 27.00 27.00 7.00 4.00 2.00 1.00 3.00 2.00 - - - 3.00 - 1.00 - 2.00 - 1.00 - - - - - - - - - 1.00
....................................................................................................................................TAGGGAAGCCCTGTAGTTGAGCGGTG............................................................................................ 26 1 24.00 24.00 1.00 1.00 5.00 5.00 3.00 - 5.00 1.00 1.00 - - - 1.00 - - - - 1.00 - - - - - - - -
........................................................................TGGCATGTCGTAGCAGCTTCTGACG......................................................................................................................................................... 25 1 22.00 22.00 9.00 7.00 - - - - - - - - - - 5.00 - - - - - - 1.00 - - - - - -
.................................................................................................................................TATTAGGGAAGCCCTGTAGTTGAGCGG.............................................................................................. 27 1 22.00 22.00 3.00 1.00 6.00 5.00 3.00 2.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - -
...............................................................................................................................................TGTAGTTGAGCGGTGTGTCTAGAACAC................................................................................ 27 1 19.00 19.00 1.00 1.00 6.00 6.00 4.00 1.00 - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TATTAGGGAAGCCCTGTAGTTGAGCGGT............................................................................................. 28 1 18.00 18.00 - - 5.00 5.00 3.00 1.00 - 2.00 1.00 - - - - - - - - 1.00 - - - - - - - -
....................................................................................................................................TAGGGAAGCCCTGTAGTTGAGCGGTGT........................................................................................... 27 1 17.00 17.00 2.00 - 4.00 4.00 1.00 1.00 3.00 2.00 - - - - - - - - - - - - - - - - - -
........................................................................TGGCATGTCGTAGCAGCTTCTGACGA........................................................................................................................................................ 26 1 11.00 11.00 4.00 2.00 1.00 1.00 - - - - 2.00 1.00 - - - - - - - - - - - - - - - -
....................................................................................................................................TAGGGAAGCCCTGTAGTTGAGCGGT............................................................................................. 25 1 7.00 7.00 1.00 1.00 3.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................TGGCATGTCGTAGCAGCTTCTGACGAT....................................................................................................................................................... 27 1 6.00 6.00 3.00 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................TGGGAACTGTGTCATATTTTATTAGG.................................................................................................................. 26 1 6.00 6.00 4.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................ACGTTACTCTGGCATGTCGTAGCAGC................................................................................................................................................................. 26 1 5.00 5.00 1.00 1.00 - 2.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TAGAACACTGTGTGACTGTAATTTCACC............................................................ 28 1 5.00 5.00 3.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - -
...............................................................................................................................................TGTAGTTGAGCGGTGTGTCTAGAACA................................................................................. 26 1 3.00 3.00 1.00 - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................................................TGACGATTTAAAGTGTTGTGGGAACT.................................................................................................................................... 26 1 3.00 3.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................TACTCTGGCATGTCGTAGCAGCTTCTG............................................................................................................................................................ 27 1 3.00 3.00 - 1.00 - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................................TATTTTATTAGGGAAGCCCTGTAGTT.................................................................................................... 26 1 2.00 2.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................TCTGGCATGTCGTAGCAGCTTCTGAC.......................................................................................................................................................... 26 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 -
............................................................................................TGACGATTTAAAGTGTTGTGGGAAC..................................................................................................................................... 25 1 2.00 2.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................TGTAGTTGAGCGGTGTGTCTAGAAC.................................................................................. 25 1 2.00 2.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................TTAGGGAAGCCCTGTAGTTGAGCGGTG............................................................................................ 27 1 2.00 2.00 - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TGAGCGGTGTGTCTAGAACACTGTGTGACT....................................................................... 30 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - -
...................................................................................................................................TTAGGGAAGCCCTGTAGTTGAGCGG.............................................................................................. 25 1 2.00 2.00 - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
..............................TTTTACCTCTGCATCTGCATTCTAGTG................................................................................................................................................................................................. 27 1 2.00 2.00 - - - - - - - - - - - - - 1.00 - - - - - - - 1.00 - - - -
........................................................................TGGCATGTCGTAGCAGCTTCTGAC.......................................................................................................................................................... 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TATTAGGGAAGCCCTGTAGTTGAGtgg.............................................................................................. 27 tgg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................TTAGGGAAGCCCTGTAGTTGAGCGGTGT........................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................TACTCTGGCATGTCGTAGCAGCTTCTa............................................................................................................................................................ 27 a 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................TGTGACTGTAATTTCACCTTGTTTAAAGGTAA.............................................. 32 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................ATGCTGTGGAGTCTTCAAAAAGCCCGT.................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TATTTTATTAGGGAAGCCCTGTAG...................................................................................................... 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................TGGCATGTCGTAGCAGC................................................................................................................................................................. 17 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...TTAAAGTTTTAGGATCCAGCCTGTCA............................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................TGTCGTAGCAGCTTCTGACGATTTAAAGT................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................ACGTTACTCTGGCATGTCGTAGCAG.................................................................................................................................................................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TGTTTAAAGGTAATGCTGTGGAGTCTT................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................TGGCATGTCGTAGCAGCTTCTGACGttt...................................................................................................................................................... 28 ttt 1.00 22.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................TGTAGTTGAGCGGTGTGTCTAGAACACT............................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................TACTCTGGCATGTCGTAGCAGCTTCTGAC.......................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TTATTAGGGAAGCCCTGTAGTTGAGCGtt............................................................................................. 29 tt 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................CTGGCATGTCGTAGCAGCTTCTGACG......................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................TGTGGGAACTGTGTCATATT.......................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.................................................................................................................................TATTAGGGAAGCCCTGTAGTTGAGCGGTG............................................................................................ 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................TAGTGTCAGTAACGTTACTCTGGC.............................................................................................................................................................................. 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................TAGCAGCTTCTGACGATTTAAAGTG............................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
............................................................................................................................................................TGTGTCTAGAACACTGTGT........................................................................... 19 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................................TGTAGTTGAGCGGTGTGTC........................................................................................ 19 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................TACCTCTGCATCTGCATTCTAGTGTCA.............................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................TGGCATGTCGTAGCAGCTTCTtacg......................................................................................................................................................... 25 tacg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TAATGCTGTGGAGTCTTCAAAAAGC........................ 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..............................................................AACGTTACTCTGGCATGTCGTAGCAGC................................................................................................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................TGTCGTAGCAGCTTCTGACGATTTAAAGTG............................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................................................................................................................................................AAGGTAATGCTGTGGAGTCTTCAAA............................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................TAGCAGCTTCTGACGATTTAAAGTGT.............................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
............TAGGATCCAGCCTGTCAATTTTACC..................................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................TGGGAACTGTGTCATATTTTATTAGGG................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................TCTGGCATGTCGTAGCAGCTTCTGACG......................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................TCTGACGATTTAAAGTGTTGTGGG........................................................................................................................................ 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.................................................TTCTAGTGTCAGTAACGTTACTCTGGCA............................................................................................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TATTAGGGAAGCCCTGTAGTTGAGCGGTt............................................................................................ 29 t 1.00 18.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................TGTGACTGTAATTTCACCTTGTTTAAAGGTA............................................... 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
..............................................................................................................................................CTGTAGTTGAGCGGTGTGTCTAGAACAC................................................................................ 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TCAAAAAGCCCGTCCTGTTTGGATTAC...... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
....................................................................................................................................................................................................AAAGGTAATGCTGTGGAGTCTTCAA............................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................TACCTCTGCATCTGCATTCTAGTGTC............................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................................TTTTATTAGGGAAGCCCTGTAGTTGAGC................................................................................................ 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
............................................................................................TGACGATTTAAAGTGTTGTGGGAA...................................................................................................................................... 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................GGGAAGCCCTGTAGTTGAGCGGTGTG.......................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................TTAGGGAAGCCCTGTAGTTGAGCGGT............................................................................................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................TGGCATGTCGTAGCAGCTTCTGACGt........................................................................................................................................................ 26 t 1.00 22.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................AAAAAGCCCGTagtt................ 15 agtt 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................GGGAAGCCCTGTAGTTGAGCGGTGT........................................................................................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TTTTATTAGGGAAGCCCTGTAGTTGAGCGGT............................................................................................. 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...................................................................................................................................................................................................TAAAGGTAATGCTGTGGAGTCTTCAAA............................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................TAGCAGCTTCTGACGATTTAAAG................................................................................................................................................. 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.........................................................................GGCATGTCGTAGCAGCTTCTGACGAT....................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CAATTAAAGTTTTAGGATCCAGCCTGTCAATTTTACCTCTGCATCTGCATTCTAGTGTCAGTAACGTTACTCTGGCATGTCGTAGCAGCTTCTGACGATTTAAAGTGTTGTGGGAACTGTGTCATATTTTATTAGGGAAGCCCTGTAGTTGAGCGGTGTGTCTAGAACACTGTGTGACTGTAATTTCACCTTGTTTAAAGGTAATGCTGTGGAGTCTTCAAAAAGCCCGTCCTGTTTGGATTACAAATTT
.........................................................................((((..((((.((((.((((.(((((.......))))).))))))))............(((((...))))).......))))..))))........................................................................................
...................................................................68............................................................................................162......................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
...................................CCTCTGCATCTGCATTCTAGTGTCAGTA........................................................................................................................................................................................... 28 1 6.00 6.00 - - - - - - - - - - 6.00 - - - - - - - - - - - - - - -
..................................ACCTCTGCATCTGCATTCTAGTGTCAGTA........................................................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -