(1)
OTHER.ip
(3)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(26)
TESTES

Sense strand
GTCTATATATAATTCTGTACATAGCCTATATTTACAGTAAAATGTAAGCGGTTTATTTTCTATTAAAGTGAGCACTGTGCTAACAGCAGTGCACACTCATTTCTATCGTTTTTGTACAGCTGACTGCACTACAGGTCATTTTGCTCTTAGCTGTAGCAAAGGCAGATTCCGTCTCTAGCTGGTCGTTTCACGGTGCTGGGCTCTCTAGGCGTCCAGGGGAGACACGCGGCAGCAGTGGGCCCTCCATGGCCTGCCCCTTGGGCTCCCCAGTGGGAACCCAGTATAGTGGGCTGCAGGAGGCCTTGCAGAGCACCGTGAATTCTCAGGGCTCCTGCTTTCCTGTCTTGGTGTCAGCTGCTG
..............................................................................................................................................((.(((.((....)).))))).......((((((.((.((((....(((.((((((((.((((..((.(((((((((......((....)).(((((((......)))))))))))))))).)).....)))).)))))))).))))))))).))))))...........................................................
..............................................................................................................................................143.............................................................................................................................................................303.......................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
...................................................................................................................................................TAGCTGTAGCAAAGGCAGATTCCGTCTC......................................................................................................................................................................................... 28 1 14.00 14.00 5.00 2.00 3.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................TTAGCTGTAGCAAAGGCAGATTCCGTCTC......................................................................................................................................................................................... 29 1 14.00 14.00 2.00 5.00 4.00 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - -
...................................................................................................................................................TAGCTGTAGCAAAGGCAGATTCCGTCT.......................................................................................................................................................................................... 27 1 10.00 10.00 2.00 3.00 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................TTTCTATCGTTTTTGTACAGCTGACTGCAC....................................................................................................................................................................................................................................... 30 1 8.00 8.00 3.00 2.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TCTTAGCTGTAGCAAAGGCAGA.................................................................................................................................................................................................. 22 1 8.00 8.00 - - - - - 8.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................TTAGCTGTAGCAAAGGCAGATTCCGTCT.......................................................................................................................................................................................... 28 1 7.00 7.00 2.00 1.00 1.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TCTTAGCTGTAGCAAAGGCAGATTCCGTC........................................................................................................................................................................................... 29 1 5.00 5.00 2.00 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................TTAGCTGTAGCAAAGGCAGATTCCGTC........................................................................................................................................................................................... 27 1 4.00 4.00 2.00 - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................................TCTTAGCTGTAGCAAAGGCAGATTCCGT............................................................................................................................................................................................ 28 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................TTTCTATCGTTTTTGTACAGCTGACTGC......................................................................................................................................................................................................................................... 28 1 3.00 3.00 - - - 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................................TAGCTGTAGCAAAGGCAGATTCCGTC........................................................................................................................................................................................... 26 1 3.00 3.00 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................TCTAGCTGGTCGTTTCACGGTGCTG.................................................................................................................................................................. 25 1 2.00 2.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - - -
....................................................................................................TTCTATCGTTTTTGTACAGCTGACTGC......................................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - -
.........................................................................................................................................ATTTTGCTCTTAGCTGTAGCAAAGGC..................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TTTCACGGTGCTGGGCTCTCTAG........................................................................................................................................................ 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..............................................................................................................................................................................................................................................................................TGGGAACCCAGTATAGTGGGCTGCAGG............................................................... 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................AGCGGTTTATTTTCTATTAAAGTGAGCAC............................................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................CTCTTAGCTGTAGCAAAGGCAGATT................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................TAGTGGGCTGCAGGAGGC........................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..........................................................................................................................................................................................................................................................................................ATAGTGGGCTGCAGGAGGCCTTGCAGAGC................................................. 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TACAGGTCATTTTGCTCTTAGCTGTAGC........................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................ATAGTGGGCTGCAGGAGGCCTTGCAGAGa................................................. 29 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.....................................TAAAATGTAAGCGGTTTATTTTCTAT......................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................CTGCTTTCCTGTCTTGGTGTCAGCTG... 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..................................................GTTTATTTTCTATTAAAGTG.................................................................................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
................................................................................................................................................TCTTAGCTGTAGCAAAGGCAGATTCCG............................................................................................................................................................................................. 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................TTAGCTGTAGCAAAGGCAGATTCCGTCTCT........................................................................................................................................................................................ 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TCTTAGCTGTAGCAAAGGCAGATTCC.............................................................................................................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................TATCGTTTTTGTACAGCTGACTGCACTA..................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................CCCAGTATAGTGGGCTGCAGGAGGCCTT........................................................ 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................TGGGAACCCAGTATAGTGGGCTGCAGGAG............................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................TTTTTGTACAGCTGcgga.......................................................................................................................................................................................................................................... 18 cgga 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................TTTCTATCGTTTTTGTACAGCTGACTtcac....................................................................................................................................................................................................................................... 30 tcac 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................TAGTGGGCTGCAGGAGGCCTTGCAGA................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...........................................................................................................................................TTTGCTCTTAGCTGTAGCAAAGGCAGATT................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TAGCTGGTCGTTTCACGGTGCTGGGCT.............................................................................................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................AGCTGTAGCAAAGGCAGATTCCGTCT.......................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................ATTTCTATCGTTTTTGTACAGCTGACT........................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...........................................................................................................GTTTTTGTACAGCTGcagt.......................................................................................................................................................................................................................................... 19 cagt 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................AAATGTAAGCGGTTTATTTTCTATTA....................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................TTCTATCGTTTTTGTACAGCTGACTGCACT...................................................................................................................................................................................................................................... 30 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................GTCTCTAGCTGGTCGTTTCACGGTG..................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
........................................................................................................ATCGTTTTTGTACAGCTGACTGCACT...................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.......................................................................................................................................................TGTAGCAAAGGCAGATTCCGTCTCTA....................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................TGCCCCTTGGGCTCCaca........................................................................................... 18 aca 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................................................................TAGCTGTAGCAAAGGCAGATTCCGTCTt......................................................................................................................................................................................... 28 t 1.00 10.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TAGGCGTCCAGGGGAGACACGCGGCAGC............................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
....................................................................................................................................................AGCTGTAGCAAAGGCAGATTCCGTCTC......................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................CGCGGCAGCAGTGGGCC....................................................................................................................... 17 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................TAGCTGTAGCAAAGGCAGATTCCGTCTCT........................................................................................................................................................................................ 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................TTCCGTCTCTAGCTGGTCGTTTCACGGTG..................................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................CTCTTAGCTGTAGCAAAGGCAGATTCCGTC........................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
....................................................................................................TTCTATCGTTTTTGTACAGCTGACTGCAC....................................................................................................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TACAGGTCATTTTGCTCTTAGCTGTAG............................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.........................................................................................................................................................TAGCAAAGGCAGATTCCGTCTCTAGCT.................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -

Antisense strand
GTCTATATATAATTCTGTACATAGCCTATATTTACAGTAAAATGTAAGCGGTTTATTTTCTATTAAAGTGAGCACTGTGCTAACAGCAGTGCACACTCATTTCTATCGTTTTTGTACAGCTGACTGCACTACAGGTCATTTTGCTCTTAGCTGTAGCAAAGGCAGATTCCGTCTCTAGCTGGTCGTTTCACGGTGCTGGGCTCTCTAGGCGTCCAGGGGAGACACGCGGCAGCAGTGGGCCCTCCATGGCCTGCCCCTTGGGCTCCCCAGTGGGAACCCAGTATAGTGGGCTGCAGGAGGCCTTGCAGAGCACCGTGAATTCTCAGGGCTCCTGCTTTCCTGTCTTGGTGTCAGCTGCTG
..............................................................................................................................................((.(((.((....)).))))).......((((((.((.((((....(((.((((((((.((((..((.(((((((((......((....)).(((((((......)))))))))))))))).)).....)))).)))))))).))))))))).))))))...........................................................
..............................................................................................................................................143.............................................................................................................................................................303.......................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
.........................................................................................................................GACTGCACTACAGGTCATTTTGCTCTTA................................................................................................................................................................................................................... 28 1 5.00 5.00 2.00 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................CAGATTCCGTCTCTAGCTGGTCGTTTCA.......................................................................................................................................................................... 28 1 3.00 3.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................GCCTTGCAGAGCACCGTGAATTCTCA................................... 26 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
...........................................................................................................................TGCACTACAGGTCATTTTGCTCTTAt................................................................................................................................................................................................................... 26 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..........................................................................................................................ACTGCACTACAGGTCATTTTGCTCTTA................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...................................................................................................................................................................AGATTCCGTCTCTAGCTGGTCGTTTCA.......................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................GCAGATTCCGTCTCTAGCTGGTCGTTTCA.......................................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................GTGCACACTCATTTCTATCGTTTTTGTA.................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................GCAGATTCCGTCTCT........................................................................................................................................................................................ 15 2 0.50 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -