(4)
OTHER.mut
(5)
PIWI.ip
(21)
TESTES

Sense strand
TGACCGGTGTGTGCTAAAACAGAACAGTTGCCAAGGAGTGTGGTATAGAAGCAGCTGAGCCTGTGTGTACCATGTGCTCCCATGTGTTCCTCTCTTCAGAAGAGTGTTGAGGAAGAGGGTGATATAGGTGCCATGCAGCAGTACTAAGAGCCCTAGGATCCAGTGGTGAAACAGTAAGTGACCAAGTCTCATTTGTACAGCGATCCCTCTGTGAGAGCGAGCAGGTTCGGGTCCAGGCTGCTCAGAAGCA
...........................................................................................((((.....))))......(((..(((((....(((.(((......)))...)))...)))))....))).........................................................................................
..........................................................................................91..............................................................................171.............................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
............................TGCCAAGGAGTGTGGTATAGAAGCAGC................................................................................................................................................................................................... 27 1 20.00 20.00 6.00 - - 1.00 5.00 - 1.00 3.00 2.00 - - 1.00 - - - - - - - 1.00 -
..............TAAAACAGAACAGTTGCCAAGGAGTGT................................................................................................................................................................................................................. 27 1 8.00 8.00 - 4.00 1.00 3.00 - - - - - - - - - - - - - - - - -
..............TAAAACAGAACAGTTGCCAAGGAGTG.................................................................................................................................................................................................................. 26 1 7.00 7.00 - 3.00 4.00 - - - - - - - - - - - - - - - - - -
............................TGCCAAGGAGTGTGGTATAGAAGCAG.................................................................................................................................................................................................... 26 1 5.00 5.00 3.00 - - - 2.00 - - - - - - - - - - - - - - - -
...............................................................................................TCAGAAGAGTGTTGAGGAAGAGGGTG................................................................................................................................. 26 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TACTAAGAGCCCTAGGATCCAGTGGT................................................................................... 26 1 3.00 3.00 - 2.00 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TAGGATCCAGTGGTGAAACAGTAAG........................................................................ 25 1 3.00 3.00 - - - 1.00 - 1.00 1.00 - - - - - - - - - - - - - -
..............TAAAACAGAACAGTTGCCAAGGAGTGTG................................................................................................................................................................................................................ 28 1 2.00 2.00 - 1.00 - - - - - - - - - - 1.00 - - - - - - - -
............................TGCCAAGGAGTGTGGTATAGAAGCAGCT.................................................................................................................................................................................................. 28 1 2.00 2.00 - - - - - - 1.00 - - - - - - 1.00 - - - - - - -
................................................................................................................................TGCCATGCAGCAGTACTAAGAGCCCTA............................................................................................... 27 1 2.00 2.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
..............................................................................................................................................................................TAAGTGACCAAGTCTCATTTGTACAGC................................................. 27 1 2.00 2.00 - - - - - - - - - 1.00 - - - - - - - - 1.00 - -
............................................................................................TCTTCAGAAGAGTGTTGAGGAAGAGG.................................................................................................................................... 26 1 2.00 2.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - - -
.........................................................................................................................................................TAGGATCCAGTGGTGAAACAGTAAGT....................................................................... 26 1 2.00 2.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - -
..............TAAAACAGAACAGTTGCCAAGGAGTGTGt............................................................................................................................................................................................................... 29 t 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGCAGCAGTACTAAGAGCCCTAGGATC.......................................................................................... 27 1 2.00 2.00 - - - 1.00 - - - - - 1.00 - - - - - - - - - - -
...............................................................................................................................................................................................TTTGTACAGCGATCCCTCTGTGAGAGC................................ 27 1 2.00 2.00 - - - - - 1.00 - - - - - - 1.00 - - - - - - - -
..............................................................................................TTCAGAAGAGTGTTGAGGAAGAGGGT.................................................................................................................................. 26 1 2.00 2.00 - - - - - - - - 1.00 - - - - - - 1.00 - - - - -
.................................................................................................AGAAGAGTGTTGAGGAAGAGGGTG................................................................................................................................. 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TACAGCGATCCCTCTGTGAGAGCGAGt............................ 27 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................................................TGAGGAAGAGGGTGATATAGGTGCCAT.................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GAGTGTTGAGGAAGAGGGTGATATAGG.......................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
...............................................................................................TCAGAAGAGTGTTGAGGAAGAGGG................................................................................................................................... 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................TTCAGAAGAGTGTTGAGGAAGAGGGTG................................................................................................................................. 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TAGGATCCAGTGGTGAAACAGTAAGTGACC................................................................... 30 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - -
..........................................................................................................................TATAGGTGCCATGCAGCAGTACTAAGA..................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................................................................AGAAGAGTGTTGAGGAAGAGGGTGA................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................................................AGCAGTACTAAGAGCCCTAGGATCCAG....................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TACTAAGAGCCCTAGGATCCAGTGGTG.................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TCCCTCTGTGAGAGCGAGCAGGTTCGt.................... 27 t 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................TCTCTTCAGAAGAGTGTTGAGGAAGA...................................................................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
.............................................................TGTGTGTACCATGTGCTCCCATGTGTT.................................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................CAGTGGTGAAACAGTAAGTGACCAAGTCT............................................................. 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TCTGTGAGAGCGAGCAGGTTCGGGTC................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - -
...CCGGTGTGTGCTAAAACAGAACAGTTGCC.......................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - -
.................AACAGAACAGTTGCCAAGGAGTGTG................................................................................................................................................................................................................ 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................GATATAGGTGCCATGCAGCAGTACTA........................................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................TGATATAGGTGCCATGCAGCAGTACT......................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
..............TAAAACAGAACAGTTGCCAAGGAGTGTGGT.............................................................................................................................................................................................................. 30 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
...........................................................................................................TGAGGAAGAGGGTGATATAGGTGC....................................................................................................................... 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................TCAGAAGAGTGTTGAGaaca....................................................................................................................................... 20 aaca 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00
............................TGCCAAGGAGTGTGGTATAGAAGCA..................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - -
..................................................................................TGTGTTCCTCTCTTCAGAAGAGTGTT.............................................................................................................................................. 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
.......TGTGTGCTAAAACAGAACAGTTGCCAA........................................................................................................................................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................................................................................TAGGTGCCATGCAGCAGTACTAAGAG.................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - -
.................................................................................................................................................................................................TGTACAGCGATCCCTCTGTGAGAGCGAGCAG.......................... 31 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
........................................................................TGTGCTCCCATGTGTTCCTCTCTTC......................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - -
.................................AGGAGTGTGGTATAGAAGCAGCTGA................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - -
...........................................................................................................TGAGGAAGAGGGTGATATAGGTGCC...................................................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
..............TAAAACAGAACAGTTGCCAAGGAGagt................................................................................................................................................................................................................. 27 agt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................TAAGTGACCAAGTCTCATTTGTACAGCGA............................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................AGCGATCCCTCTGTGAGAGCGAGCAGGTT....................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................CCTCTGTGAGAGCGAGCAGGTTCGGGT.................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
...........TGCTAAAACAGAACAGTTGCCAAGGAGT................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - -
............................TGCCAAGGAGTGTGGTATAGAAGgagt................................................................................................................................................................................................... 27 gagt 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TGTACAGCGATCCCTCTGTGAGAGCGAGC............................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - -
..............TAAAACAGAACAGTTGCCAAGGAGTGagt............................................................................................................................................................................................................... 29 agt 1.00 7.00 - - 1.00 - - - - - - - - - - - - - - - - - -
..................................................................................................................................................AGAGCCCTAGGATCCAGTGGTGAAACAGT........................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
..............TAAAACAGAACAGTTGCCAAGGAGTGTGGTA............................................................................................................................................................................................................. 31 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - -
.............................................TAGAAGCAGCTGAGCCTGTGTGTA..................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - -
................................................................................................................................................................................................TTGTACAGCGATCCCTCTGTGAGAGC................................ 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - -
...........................................................................................................................................................................................................TCCCTCTGTGAGAGCGAGCAGGTT....................... 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
..............TAAAACAGAACAGTTGCCAAGGAGTGTGG............................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - -
................................................................................................................................................................................................TTGTACAGCGATCCCTCTGTGAGAGCG............................... 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................................................................................................................................................................TCCCTCTGTGAGAGCGAGCAGGTTCG..................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - -
.................AACAGAACAGTTGCCAAGGAGTGTGGTA............................................................................................................................................................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
...........TGCTAAAACAGAACAGTTGCCAAGGA..................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................................GAGTGTTGAGGAAGAGGGTGATATAGGT......................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TACTAAGAGCCCTAGGATCCAGTGG.................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................................TAAGAGCCCTAGGATCCAGTGGTGAAAC.............................................................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
................................................................................................................................................TAAGAGCCCTAGGATCCAGTGGTGAA................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................TAGAAGCAGCTGAGCCTGTGTGTACC................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
...............................................................................................TCAGAAGAGTGTTGAGGAAGAGG.................................................................................................................................... 23 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................TCAGAAGAGTGTTGAGGAAGAGGGT.................................................................................................................................. 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - -
........................................................................................................................................AGCAGTACTAAGAGCCCTAGGATCCAGT...................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................TGATATAGGTGCCATGCAGCAGTACTA........................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -

Antisense strand
TGACCGGTGTGTGCTAAAACAGAACAGTTGCCAAGGAGTGTGGTATAGAAGCAGCTGAGCCTGTGTGTACCATGTGCTCCCATGTGTTCCTCTCTTCAGAAGAGTGTTGAGGAAGAGGGTGATATAGGTGCCATGCAGCAGTACTAAGAGCCCTAGGATCCAGTGGTGAAACAGTAAGTGACCAAGTCTCATTTGTACAGCGATCCCTCTGTGAGAGCGAGCAGGTTCGGGTCCAGGCTGCTCAGAAGCA
...........................................................................................((((.....))))......(((..(((((....(((.(((......)))...)))...)))))....))).........................................................................................
..........................................................................................91..............................................................................171.............................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
................................................................................ATGTGTTCCTCTCTTCAa........................................................................................................................................................ 18 a 2.00 0.00 - - - - - - - - - - 2.00 - - - - - - - - - -