(4)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(3)
PIWI.mut
(25)
TESTES

Sense strand
TTCATCCACACAGACCTCCCGGACCGGCAGCCCTCACTGGCTATGCAGAGGTGGGTGCCCAGGAGTGTAGATGGGTTTCCCCATGTAGGACCCGTCATGACCTGGATTTCCCAGCTCATCCTGGAGACCCCTAAGTTGTCTGTAGGGACAGTACAAGATAGCTGAGCCTAGTTCCCCGTTTGGAAAAGTCTGGCCCTGGGTGCAGCATGCATGTGGGAAAGAGACATTGGCATGCTGAGCCAGCACAGAC
................................................................................................................................(((..(((((((((((.......)))).)))))))..(((...((((......))))......)))...)))..................................................
..............................................................................................................................127......................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
.....................................................................................................................................................................................................................TGGGAAAGAGACATTGGCATGCTGAGC.......... 27 1 57.00 57.00 26.00 15.00 4.00 10.00 - - - 1.00 - - - - 1.00 - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGCATGTGGGAAAGAGACATTGGCAT................. 26 1 32.00 32.00 10.00 10.00 6.00 2.00 - - - - - - - - - 2.00 - - 1.00 - - - - - - - 1.00 -
...............................................................................................................................................................................................................TGCATGTGGGAAAGAGACATTGGCATG................ 27 1 26.00 26.00 12.00 5.00 5.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - -
....TCCACACAGACCTCCCGGACCGGCAGC........................................................................................................................................................................................................................... 27 1 14.00 14.00 5.00 4.00 3.00 2.00 - - - - - - - - - - - - - - - - - - - - - -
................................CTCACTGGCTATGCAGAG........................................................................................................................................................................................................ 18 1 13.00 13.00 - - - - 13.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGGGAAAGAGACATTGGCATGCTGAG........... 26 1 7.00 7.00 1.00 3.00 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
.TCATCCACACAGACCTCCCGGACCGGCA............................................................................................................................................................................................................................. 28 1 7.00 7.00 4.00 2.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................TAAGTTGTCTGTAGGGACAGTACAAG............................................................................................. 26 1 7.00 7.00 3.00 2.00 - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - -
........................................................................................................................................................................TAGTTCCCCGTTTGGAAAAGTCTGGC........................................................ 26 1 6.00 6.00 - - 2.00 - - 1.00 - - 1.00 - 1.00 - - - - - - - - - - 1.00 - - - -
.TCATCCACACAGACCTCCCGGACCGGC.............................................................................................................................................................................................................................. 27 1 6.00 6.00 - - - - 6.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGGGAAAGAGACATTGGCATGCTGAGCCA........ 29 1 5.00 5.00 1.00 1.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................TAAGTTGTCTGTAGGGACAGTACAAGA............................................................................................ 27 1 5.00 5.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - -
....TCCACACAGACCTCCCGGACCGGCAGCCC......................................................................................................................................................................................................................... 29 1 5.00 5.00 3.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................TAGGACCCGTCATGACCTGGATTTCCCAGC....................................................................................................................................... 30 1 4.00 4.00 - - - - - 3.00 - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................................................................................TAGTTCCCCGTTTGGAAAAGTCTGGCC....................................................... 27 1 3.00 3.00 - 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................TGTGGGAAAGAGACATTGGCATGCTGA............ 27 1 3.00 3.00 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGGGAAAGAGACATTGGCATGCTGA............ 25 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGGGAAAGAGACATTGGCATGCTGAGCC......... 28 1 3.00 3.00 - 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TGTCTGTAGGGACAGTACAAGATAGCTG...................................................................................... 28 1 3.00 3.00 1.00 - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TGGAAAAGTCTGGCCCTGGGTGCAGCA........................................... 27 1 2.00 2.00 - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
.........ACAGACCTCCCGGACgggc.............................................................................................................................................................................................................................. 19 gggc 2.00 0.00 - - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
.................................................................................................TGACCTGGATTTCCCAGCTCATCCTGGAGt........................................................................................................................... 30 t 2.00 0.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TGTAGGGACAGTACAAGATAGCTGAGC................................................................................... 27 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................AGAGACATTGGCATGCTGAGCCAGCAC.... 27 1 2.00 2.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGCATGTGGGAAAGAGACATTGGCA.................. 25 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................TGTAGGACCCGTCATGACCTGGATTTC............................................................................................................................................ 27 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............GACCTCCCGGACCGGCAGCCCTCAat.................................................................................................................................................................................................................... 26 at 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............GACCTCCCGGACCGGCAGCCCTCAC..................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......ACACAGACCTCCCGGACCGGCAGC........................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................AGGACCCGTCATGACCTGGATTTCCCAG........................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
........................................................................................................................................................ACAAGATAGCTGAGCCTAGTTCCCCGTT...................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..........CAGACCTCCCGGACCGGCAGCCCccaa..................................................................................................................................................................................................................... 27 ccaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.........................................TATGCAGAGGTGGGTGCCCAGGAGT........................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..........CAGACCTCCCGGACCGGCAGCCCTCAa..................................................................................................................................................................................................................... 27 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................GCAGAGGTGGGTGCCCAGGAGTGTA..................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................CCAGGAGTGTAGATGGGTTTCCCCATGT.................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................................................................................................................................................................................................TGGGAAAGAGACATTGGCATGCTGAa........... 26 a 1.00 3.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................TAAGTTGTCTGTAGGGACAGTACAA.............................................................................................. 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
....TCCACACAGACCTCCCGGACCGGCAGgcc......................................................................................................................................................................................................................... 29 gcc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................TGGCTATGCAGAGGTGGGTGCCCcgg........................................................................................................................................................................................... 26 cgg 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................................................................................TAGTTCCCCGTTTGGAAAAGTCTGGCg....................................................... 27 g 1.00 6.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.TCATCCACACAGACCTCCCGGACCGGCAa............................................................................................................................................................................................................................ 29 a 1.00 7.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......ACACAGACCTCCCGGACCGGCAGCCCT........................................................................................................................................................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................TCTGTAGGGACAGTACAAGATAGCTGA..................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................TGGAGACCCCTAAGTTGTCTGTAGGGAC..................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGGGAAAGAGACATTGGCATGCTGAGCCAt....... 30 t 1.00 5.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............GACCTCCCGGACCGGCAGCCCTCA...................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..............................................................................................................................................................................CCCGTTTGGAAAAGTCTGGCCCTGG................................................... 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
............GACCTCCCGGACCGGCAGCC.......................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TTCCCCGTTTGGAAAAGTCTGGCCC...................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........CACAGACCTCCCGGACCGGCAGCCCT........................................................................................................................................................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..CATCCACACAGACCTCCCGGACCGGCAGC........................................................................................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................CCAGGAGTGTAGATGGGT.............................................................................................................................................................................. 18 3 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
................TCCCGGACCGGCAGCCCTCACTGGCTAT.............................................................................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........CACAGACCTCCCGGACCGGCAGCCCTC....................................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGCATGTGGGAAAGAGACATTGGCATGa............... 28 a 1.00 26.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................TCTGGCCCTGGGTGCAGCATGC........................................ 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
....................................................................................................................................................................................TGGAAAAGTCTGGCCCTGGGTGCAGCAT.......................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............GACCTCCCGGACCGGCAGCCCTCACT.................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGCATGTGGGAAAGAGACATTGGCATt................ 27 t 1.00 32.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....TCCACACAGACCTCCCGGACCGGCAGg........................................................................................................................................................................................................................... 27 g 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
TTCATCCACACAGACCTCCCGGACCGGCAGCCCTCACTGGCTATGCAGAGGTGGGTGCCCAGGAGTGTAGATGGGTTTCCCCATGTAGGACCCGTCATGACCTGGATTTCCCAGCTCATCCTGGAGACCCCTAAGTTGTCTGTAGGGACAGTACAAGATAGCTGAGCCTAGTTCCCCGTTTGGAAAAGTCTGGCCCTGGGTGCAGCATGCATGTGGGAAAGAGACATTGGCATGCTGAGCCAGCACAGAC
................................................................................................................................(((..(((((((((((.......)))).)))))))..(((...((((......))))......)))...)))..................................................
..............................................................................................................................127......................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
.....................................................................................................................................................................................AAAAGTCTGGCCCTtt..................................................... 16 tt 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................................CTGAGCCTAGTTCCCCgt......................................................................... 18 gt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00