| Gene: Rapgef3 | ID: uc007xkz.1_intron_6_0_chr15_97580173_r | SPECIES: mm9 |
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(2) OTHER.mut |
(1) PIWI.ip |
(12) TESTES |
| CCTGGCTCCCGGGCTCAGCTACTCAGGAAGTTCATCAAGCTGGCAGCCCAGTGAGTGCCTGTTGGGACTGCAGGGTGTGTGGAGATGATGGGGTATGGGGAGGACAGTGGAATGTGCGGAGACAGGGTGGTGTGTTGCCAGTCCCGCAGCCACCCTTTCTTAACCCCTCTCCCTGCCTGCTGCGTTGCCCAATCTGCCTTCTTTTTGTTCTTGGGTTCCCAGAGCCTTTGCCTCTTACTTAACCCACCCACCCTACATCACTGGGGATTTGGCTGTTTCCTCTGAGGGTGTCTGGGTCTTGTGCTCACTCACAGCCTCAAGGAGCAGAAGAACCTCAACTCTTTCTTTGCGGTCATGTTTGGCC |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037902(GSM510438) testes_rep3. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT2() Testes Data. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTGAGTGCCTGTTGGGACTGCAGGGT................................................................................................................................................................................................................................................................................................ | 26 | 1 | 11.00 | 11.00 | 11.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGCCTGTTGGGACTGCAGG.................................................................................................................................................................................................................................................................................................. | 24 | 1 | 4.00 | 4.00 | - | - | 2.00 | - | - | - | 2.00 | - | - | - | - | - |
| ..................................................GTGAGTGCCTGTTGGGACTGCAGGG................................................................................................................................................................................................................................................................................................. | 25 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - |
| ......................................................................................................GACAGTGGAATGTGCGGAGACAGGGTG........................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................GACAGTGGAATGTGCGGAGACAGGG............................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................TGATGGGGTATGGGGAGGACAGTGGA............................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................GAGTGCCTGTTGGGACTGC..................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................AGGAGCAGAAGAACCTCAACTCTTTCT.................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| CCTGGCTCCCGGGCTCAGCTACTCAGGAAGTTCATCAAGCTGGCAGCCCAGTGAGTGCCTGTTGGGACTGCAGGGTGTGTGGAGATGATGGGGTATGGGGAGGACAGTGGAATGTGCGGAGACAGGGTGGTGTGTTGCCAGTCCCGCAGCCACCCTTTCTTAACCCCTCTCCCTGCCTGCTGCGTTGCCCAATCTGCCTTCTTTTTGTTCTTGGGTTCCCAGAGCCTTTGCCTCTTACTTAACCCACCCACCCTACATCACTGGGGATTTGGCTGTTTCCTCTGAGGGTGTCTGGGTCTTGTGCTCACTCACAGCCTCAAGGAGCAGAAGAACCTCAACTCTTTCTTTGCGGTCATGTTTGGCC |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037902(GSM510438) testes_rep3. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT2() Testes Data. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................................CTGCCTTCTTTTTGTTCTTGGGTTCCCA............................................................................................................................................... | 28 | 1 | 11.00 | 11.00 | - | 11.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................GCCAGTCCCGCAGCCACCCTTTCTTA.......................................................................................................................................................................................................... | 26 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................ACTCACAGCCTCAAGagg........................................... | 18 | agg | 3.00 | 0.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - |
| ........CCGGGCTCAGCTACTCAGGAAGTTCA.......................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................ATCTGCCTTCTTTTTGTTCTTGGGTTCCCA............................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ............GCTCAGCTACTCAGGAAGTTCATCAA...................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....................................................................................................................................................................................................................GGGTTCCCAGAGCCTTTG...................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................TGGGTCTTGTGCTCACTCACAGCCTCA............................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................TCTTAACCCCTCTCCCTg.............................................................................................................................................................................................. | 18 | g | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................GTTCCCAGAGCCTTTGCCTCTTACTa............................................................................................................................. | 26 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ........................................................................................................................................................................................................................TCCCAGAGCCTTTGCCTCTTACT............................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .........CGGGCTCAGCTACTCAGGAAGTTCAT......................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TCTGCCTTCTTTTTGTTCTTGGGTTCCCA............................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ....................ACTCAGGAAGTTCATCAAGCTGGCA............................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |