(5)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(3)
PIWI.mut
(22)
TESTES

Sense strand
ATAGTAAAAACGGAGGACCCAAACTCTTAAGAGAACACAAAGGGTCACATTTAAATTACTGAGAAAGGCAACATAAAAATGAATTCAGAGCCAACCCACCACGTCAGGTCTCGTCCACGTTAACGGCGCAGTCTTAAAACTTAGGTCATTATTGTTCCTAAAGCAAGAGAGCAAACGTTGTATCCTGTCATTTGCCCCAGAGGCCACCGGAAATGGCATCACCTCCCCAGACACTGCCTTGTGAAAGTTG
.........................................................................................(((.....(((......)))..((....)).....)))((..((((.....(((((.((....))..)))))...))))..))..............................................................................
....................................................................69.......................................................................................................174..........................................................................
Size Perfect hit Total Norm Perfect Norm SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
.........................................................................TAAAAATGAATTCAGAGCCAACCCACC...................................................................................................................................................... 27 1 6.00 6.00 - 2.00 - 1.00 2.00 - - - - - - - - - 1.00 - - - - - - - -
.TAGTAAAAACGGAGGACCCAAACTCT............................................................................................................................................................................................................................... 26 1 4.00 4.00 - - - - 1.00 - 1.00 1.00 1.00 - - - - - - - - - - - - - -
........................................................................................................................TAACGGCGCAGTCTTAAAACTTAGGTC....................................................................................................... 27 1 4.00 4.00 1.00 - 1.00 - - - - 1.00 - - 1.00 - - - - - - - - - - - -
...................................................TAAATTACTGAGAAAGGCAACATAAAA............................................................................................................................................................................ 27 1 3.00 3.00 2.00 - - - - - - - - - - - - - - - - 1.00 - - - - -
...................................................TAAATTACTGAGAAAGGCAACATAAAAAT.......................................................................................................................................................................... 29 1 3.00 3.00 - 1.00 - - - 1.00 - - - 1.00 - - - - - - - - - - - - -
...........................TAAGAGAACACAAAGGGTCACATTTA..................................................................................................................................................................................................... 26 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................AAGGGTCACATTTAAATTACTGAGAAAGGCAA................................................................................................................................................................................... 32 1 2.00 2.00 - - - - - - - - - - - - - 2.00 - - - - - - - - -
...................................................................................................CACGTCAGGTCTCGTCCACGTTAACGGC........................................................................................................................... 28 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - 1.00 - - - - - -
.............................................................................................................................................TAGGTCATTATTGTTCCTAAAGCAAGAGA................................................................................ 29 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................TCCTGTCATTTGCCCCAGAGGCCACCGG........................................ 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................TGAATTCAGAGCCAACCCACCACGTC................................................................................................................................................. 26 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - -
...........................................................................................................................................................TCCTAAAGCAAGAGAGCAAACGTTGTA.................................................................... 27 1 2.00 2.00 - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
...................................CACAAAGGGTCACAggtt..................................................................................................................................................................................................... 18 ggtt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - -
...............................................................................TGAATTCAGAGCCAACCCACCACGTCAGG.............................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................................................................TGTTCCTAAAGCAAGAGAGCAAACGTTG...................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................TTGTTCCTAAAGCAAGAGA................................................................................ 19 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TGTTCCTAAAGCAAGAGAGCAAACGTT....................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................................................TAAATTACTGAGAAAGGCAACATAAAAA........................................................................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TAAAGCAAGAGAGCAAACGTTGTATCCTG............................................................... 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................................................................TAAAGCAAGAGAGCAAACGTTGTATCCT................................................................ 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................TTGTTCCTAAAGCAAGAGAGCAAACGTT....................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
........................................................................................................................................................................................................AGGCCACCGGAAATGGCATCACCTCCCC...................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TTGCCCCAGAGGCCACCGGAAATGGCATC.............................. 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................AGGCAACATAAAAATGAATTCAGAGCC.............................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................AGAAAGGCAACATAAAAATGAATTCAGAGC............................................................................................................................................................... 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................TAAATTACTGAGAAAGGCAACATAAA............................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................AAAGCAAGAGAGCAAACGTTGTATCCTG............................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................TACTGAGAAAGGCAACATAAAAATGAAT...................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
....................................ACAAAGGGTCACATTTAAATTACTGAG........................................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................TACTGAGAAAGGCAACATAAAAATGAATTC.................................................................................................................................................................... 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................AGAGAGCAAACGTTGTATCCTGTCATT.......................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................TGCCCCAGAGGCCACCGGAAATGGCATC.............................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................TAACGGCGCAGTCTTAAAACTTAGG......................................................................................................... 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
...........................................................................................................................................................TCCTAAAGCAAGAGAGCAAACGTTG...................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - -
.......................................................................................................................................................TTGTTCCTAAAGCAAGAGAGCAAACGT........................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................AGAGAACACAAAGGGTCACATTTAAATT................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
...................................................TAAATTACTGAGAAAGGCAACATAcac............................................................................................................................................................................ 27 cac 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................TTAAATTACTGAGAAAGGCAACATAAA............................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
....TAAAAACGGAGGACCCAAACTCTT.............................................................................................................................................................................................................................. 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TAAAACTTAGGTCATTATTGTTCCT........................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -
...........................................................TGAGAAAGGCAACATAAAAATGAATTCAGA................................................................................................................................................................. 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
...........................TAAGAGAACACAAAGGGTCACATTTAAAT.................................................................................................................................................................................................. 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................................................TTTAAATTACTGAGAAAGGCAACATAAA............................................................................................................................................................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
................................................................AAGGCAACATAAAAATGAATTCAGAGCC.............................................................................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.TAGTAAAAACGGAGGACCCAAACTC................................................................................................................................................................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................TCCTGTCATTTGCCCCAGAGGCCACC.......................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................ACACAAAGGGTCACATTTAAATTACTGAGA.......................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - -
..............................................................................................................................................................................................TTTGCCCCAGAGGCCACCGGAAATGGCATC.............................. 30 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
.TAGTAAAAACGGAGGACCCAAACTCTT.............................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
...................CAAACTCTTAAGAGAACACAAAGGGT............................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................TCAGGTCTCGTCCACGTTAACGGCGC......................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TGTCATTTGCCCCAGAGGCCACCGGAAA..................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................GAACACAAAGGGTCACATTTAAATTACTG............................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
................................................................................................................................................................AAGCAAGAGAGCAAACGTTGTATCCTGT.............................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TAAAACTTAGGTCATTATTGTTCCTA.......................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................TAAGAGAACACAAAGGGTCACATTTAA.................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................ATAAAAATGAATTCAGAGCCAACC.......................................................................................................................................................... 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TAAAGCAAGAGAGCAAACGTTGTATC.................................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................TAACGGCGCAGTCTTAAAACTTtggt........................................................................................................ 26 tggt 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................TTAAGAGAACACAAAGGGTCACATTTAA.................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................TAAAAATGAATTCAGA................................................................................................................................................................. 16 13 0.08 0.08 - - - - 0.08 - - - - - - - - - - - - - - - - - -

Antisense strand
ATAGTAAAAACGGAGGACCCAAACTCTTAAGAGAACACAAAGGGTCACATTTAAATTACTGAGAAAGGCAACATAAAAATGAATTCAGAGCCAACCCACCACGTCAGGTCTCGTCCACGTTAACGGCGCAGTCTTAAAACTTAGGTCATTATTGTTCCTAAAGCAAGAGAGCAAACGTTGTATCCTGTCATTTGCCCCAGAGGCCACCGGAAATGGCATCACCTCCCCAGACACTGCCTTGTGAAAGTTG
.........................................................................................(((.....(((......)))..((....)).....)))((..((((.....(((((.((....))..)))))...))))..))..............................................................................
....................................................................69.......................................................................................................174..........................................................................
Size Perfect hit Total Norm Perfect Norm SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
..................................................................................................CCACGTCAGGTCTCGTCCAC.................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 -
..........................................................................................................................................................TAAAGCAAGAGAGCAAagcc............................................................................ 20 agcc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00
........AACGGAGGACCCAAACTCTTAAGAGAACA..................................................................................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................ACGTCAGGTCTCGTCCACGTT................................................................................................................................. 21 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................AAGAGAGCAAACGTTGTATCCTGTCA............................................................ 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
..................................................................................................CCACGTCAGGTCTCGTCCACGTTA................................................................................................................................ 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................TAAATTACTGAGAAAGGCAACATAAAA............................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
....AACGGAGGACCCAAAgtta................................................................................................................................................................................................................................... 19 gtta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................AATGAATTCAGAGCCAACCCACCAC.................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - -
................................................................................GAATTCAGAGCCAACCCACCACGTCA................................................................................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................CACCACGTCAGGTCTCGTCCACGTTA................................................................................................................................ 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -