(1)
OTHER.ip
(4)
OTHER.mut
(5)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(27)
TESTES

Sense strand
AACGCAACACTGTGCCCGCCCCCTCAGCCTCCTGCGGTGATTATCCGAATACATTTCCCTCCAGCTTCCCGTGGATGGGTGGATGAACAGGCGGGCCGATGGAGCTAGAAAGAGACATAGTGAATTGGAACTTGGGTGGCATAGACACAGACCTCCTTTCAGGGTACCCCAAACTCTCCTGCGCTCGTTTCCCCTGTTAGCTGTTCCAGTCAAGTTCTCGGCAAAGCAGCAGGCTCCTCATTACCTCTAC
.....................................................................................................(((((((..((((......((((..(((..((..(((.......))).))..))).))))(((...)))...)))).))).))))................................................................
....................................................................................................101................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
........................................................................................................................TGAATTGGAACTTGGGTGGCATAGACAC...................................................................................................... 28 1 5.00 5.00 - 2.00 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
.................................................................................................................................................................................................................TCAAGTTCTCGGCAAAGCAGCAGGCTC.............. 27 2 2.00 2.00 - 0.50 - - 0.50 - - 0.50 - - - - - - - - - - - - 0.50 - - - - - -
................................................................................................................................................................................................................GTCAAGTTCTCGGCAAAGCAGCAGGCTC.............. 28 2 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................TGGAGCTAGAAAGAGACATAGTGAATT............................................................................................................................ 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TAGTGAATTGGAACTTGGGTGGCATA........................................................................................................... 26 1 2.00 2.00 - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................GAAAGAGACATAGTGAATTGGAACTTG.................................................................................................................... 27 1 2.00 2.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................GCGGGCCGATGGAGCTAGAAAGAGACAT.................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.........................................................................................................TAGAAAGAGACATAGTGAATTGGAAC....................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................TAGAAAGAGACATAGTGAATTGGAACTTGG................................................................................................................... 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................TTAGCTGTTCCAGTCAAGTTCTCGGCAA.......................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TAGCTGTTCCAGTCAAGTTCTCct............................. 24 ct 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
........................................................................................................................TGAATTGGAACTTGGGTGGCATAGAC........................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
........................................................................................................................TGAATTGGAACTTGGGTGGCA............................................................................................................. 21 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................AGAAAGAGACATAGTGAATTGGAACT...................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................GGGCCGATGGAGCTAGAAAGAGACATAGT................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................AGAAAGAGACATAGTGAATTGGAACTT..................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................GCGGGCCGATGGAGCTAGAAAGA......................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
........................................................................................................................TGAATTGGAACTTGGGTGGCATAGA......................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................GGCGGGCCGATGGAGCTAGAAAGAG........................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.....................................................................................................................TAGTGAATTGGAACTTGGGTGGCAT............................................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TAGCTGTTCCAGTCAAGTTCTCGGCAAA......................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TTCCAGTCAAGTTCTCGGCAAAGCcgc.................... 27 cgc 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................AGCTAGAAAGAGACATAGTGAATTGGAAC....................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TCCAGTCAAGTTCTCGGCAAAGCAGC.................... 26 2 1.00 1.00 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - - - - - -
............................................................................................................................TTGGAACTTGGGTGGCATAGACACAG.................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TTGGAACTTGGGTGGCATAGACAta..................................................................................................... 25 ta 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................TGGATGGGTGGATGAACAGGCGGGC.......................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TCCAGTCAAGTTCTCGGCAAAGCAGCA................... 27 2 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................AGTTCTCGGCAAAGCAGCAGGCTtc............. 25 tc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TGTTAGCTGTTCCAGTCAAGTTCTCGGC............................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................................TGAATTGGAACTTGGGTGGCATAGACACA..................................................................................................... 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................GTGAATTGGAACTTGGGTGGCATAGA......................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................TAGAAAGAGACATAGTGAATTGGAACT...................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................CAAGTTCTCGGCAAAGCAGCAGGCTCC............. 27 2 1.00 1.00 0.50 - - - - - - 0.50 - - - - - - - - - - - - - - - - - - -
...............................................................................................CCGATGGAGCTActgg........................................................................................................................................... 16 ctgg 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TAGCTGTTCCAGTCAAGTTCTCGGCAA.......................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................GTCAAGTTCTCGGCAAAGCAGCAGGCTCC............. 29 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................CAAGTTCTCGGCAAAGCAGCAGGCTC.............. 26 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - 0.50 - - - -
.........................................................................................................................................................................................................................TCGGCAAAGCAGCAGGCTCC............. 20 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - 0.50 - - - - - -
...................................................................................................................................................................................................................AAGTTCTCGGCAAAGCAGCAGGCTCCTC........... 28 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - 0.50 -
...................................................................................................................................................................................................................AAGTTCTCGGCAAAGCAGCAGGCTCCTCA.......... 29 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.50
.........................................................................................................................................................................................................TGTTCCAGTCAAGTTCTCGGCAAAGCAG..................... 28 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................GTCAAGTTCTCGGCAAAGCAGCAGGCTCCT............ 30 2 0.50 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TCTCGGCAAAGCAGCAGGCTCCTCAT......... 26 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TCGGCAAAGCAGCAGGCTCCTCATTAC...... 27 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TTCCAGTCAAGTTCTCGGCAAAGCAGC.................... 27 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TAGTGAATTGGAACTT..................................................................................................................... 16 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - 0.50 - -
.............................................................................................................................................................................................................CCAGTCAAGTTCTCGGCAAAGCAGC.................... 25 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - 0.50 - - -
..................................................................................................................................................................................................................CAAGTTCTCGGCAAAGCAGCAGGCTCt............. 27 t 0.50 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................AAGTTCTCGGCAAAGCAGCAGGCTCCT............ 27 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................CAGTCAAGTTCTCGGCAAAGCAG..................... 23 2 0.50 0.50 - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - -
......................................................................................................................................................................................................................TTCTCGGCAAAGCAGCAGGCTCCTCATT........ 28 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TCAAGTTCTCGGCAAAGCAGCAGGCTCC............. 28 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................AGCTGTTCCAGTCAAGTTCTCGGCAA.......................... 26 2 0.50 0.50 - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - -
................................................................................................................................................................................................................GTCAAGTTCTCGGCAAAGCAGCAGG................. 25 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TCAAGTTCTCGGCAAAGCAGCAGGCTCCTCATT........ 33 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................GTCAAGTTCTCGGCAAAGCAGCAGGCT............... 27 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................GTCAAGTTCTCGGCAAAGCAGCAGGCTgc............. 29 gc 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................CCAGTCAAGTTCTCGGCAAAGCAGCAG.................. 27 2 0.50 0.50 - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - -

Antisense strand
AACGCAACACTGTGCCCGCCCCCTCAGCCTCCTGCGGTGATTATCCGAATACATTTCCCTCCAGCTTCCCGTGGATGGGTGGATGAACAGGCGGGCCGATGGAGCTAGAAAGAGACATAGTGAATTGGAACTTGGGTGGCATAGACACAGACCTCCTTTCAGGGTACCCCAAACTCTCCTGCGCTCGTTTCCCCTGTTAGCTGTTCCAGTCAAGTTCTCGGCAAAGCAGCAGGCTCCTCATTACCTCTAC
.....................................................................................................(((((((..((((......((((..(((..((..(((.......))).))..))).))))(((...)))...)))).))).))))................................................................
....................................................................................................101................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
...............................................................................................................................................CAGACCTCCTTTCAgtgt......................................................................................... 18 gtgt 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
............................CTCCTGCGGTGATTATCCGAATACA..................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.....................................................................................................................................................................................................TAGCTGTTCCAGTCAAGTTCTCGGCA........................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................TTTCCCTCCAGCTTCagt...................................................................................................................................................................................... 18 agt 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................CAGTCAAGTTCTCGGCAAAGCAGCA................... 25 2 0.50 0.50 - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................GTTCCAGTCAAGTTCTCGGCAAAGCA...................... 26 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -