(8)
OTHER.mut
(1)
OVARY
(5)
PIWI.ip
(3)
PIWI.mut
(29)
TESTES

Sense strand
GAGTCTCCGATGCCTACTACTGTAAAGAGTGCACCATTCAGGAGAAGGATGTGAGTGTAGGCTGAGCTTCCTACCCGCTCTTCTCTTCCTTTTACTTTGAACCATTTTGCCATCCATGGCCACCTCTTCTGATCTGGGCTGTGGAGATTGCAGTGTTCAGCTAGTTATCTAGGTAATTTCTTCAAGCCTGTGAGCCAAACTGGGTGTGGTCTAATAAAGAGCAGTTACTCTGTATCAGGGCAGAATGGAA
....................................................(((((((((........)))))..))))..........................((((..(((((((((...((....))....)))))))))....)))).................................................................................................
..................................................51.......................................................................................................156............................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT3()
Testes Data. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
..............................................................................................................................TTCTGATCTGGGCTGTGGAGATTGCA.................................................................................................. 26 1 28.00 28.00 1.00 - 5.00 4.00 4.00 - 5.00 - - - - - 1.00 4.00 1.00 - - - - - - 1.00 - - 1.00 - 1.00 - - -
..............................................................................................................................TTCTGATCTGGGCTGTGGAGATTGC................................................................................................... 25 1 25.00 25.00 6.00 4.00 - 1.00 - 5.00 - - 2.00 - 1.00 - - - - 2.00 2.00 - - - 1.00 1.00 - - - - - - - -
.................TACTGTAAAGAGTGCACCATTCAGGAG.............................................................................................................................................................................................................. 27 1 14.00 14.00 - - - 4.00 4.00 - 1.00 1.00 1.00 - - - 2.00 - 1.00 - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TAAAGAGCAGTTACTCTGTATCAGGGC......... 27 1 13.00 13.00 2.00 3.00 - - - 1.00 - 3.00 1.00 - 1.00 - - - 1.00 - - 1.00 - - - - - - - - - - - -
...................................................................................................................................................................................................................TAATAAAGAGCAGTTACTCTGTATCAGGGC......... 30 1 9.00 9.00 2.00 - - - - 1.00 - 2.00 3.00 - - - - - - - - - - - - - - - - - - - 1.00 -
...............................................................................................................................................................................................................................GTTACTCTGTATCAGGGCAGAATGG.. 25 1 8.00 8.00 - - 8.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TGATCTGGGCTGTGGAGATTGCAGTG............................................................................................... 26 1 6.00 6.00 2.00 1.00 - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - 1.00 - -
...............................................................................................................................TCTGATCTGGGCTGTGGAGATTGCA.................................................................................................. 25 1 3.00 3.00 - - - - - - - - - - - 1.00 - - 1.00 - - - - 1.00 - - - - - - - - - -
...............................................................................................................................TCTGATCTGGGCTGTGGAGATTGC................................................................................................... 24 1 3.00 3.00 1.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................TCTGATCTGGGCTGTGGAGATTGCAGT................................................................................................ 27 1 3.00 3.00 - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - 1.00 - - - - -
.................TACTGTAAAGAGTGCACCATTCAGGAGA............................................................................................................................................................................................................. 28 1 3.00 3.00 - - - 2.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.................TACTGTAAAGAGTGCACCATTCAGGAGt............................................................................................................................................................................................................. 28 t 3.00 14.00 - - - 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................TAAAGAGTGCACCATTCAGGAGAAGG.......................................................................................................................................................................................................... 26 1 3.00 3.00 - - - - - - - - - - - - - - - 2.00 - - - - - - 1.00 - - - - - - -
.....TCCGATGCCTACTACTGTAAAGAGTGC.......................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - - - - 1.00 - - - - - - - - - - - 1.00 - - - - - - -
............................................................................................................................TCTTCTGATCTGGGCTGTGGAGATTGC................................................................................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................TACTGTAAAGAGTGCACCATTCAGGA............................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - 1.00 - - - - - -
.....................GTAAAGAGTGCACCATTCAGGAGAAGG.......................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................ATAAAGAGCAGTTACTCTGTATCAGGGC......... 28 1 2.00 2.00 - - - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - -
........................AAGAGTGCACCATTCAGGAGAAGGATa....................................................................................................................................................................................................... 27 a 2.00 0.00 - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
....................................TTCAGGAGAAGGATGTGAGTGTAGGg............................................................................................................................................................................................ 26 g 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................CTGTAAAGAGTGCACCATTCAGGAGA............................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................CTACTGTAAAGAGTGCACCATTCAGGAGA............................................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...........................AGTGCACCATTCAGGAGAAGGATGTG..................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............TACTACTGTAAAGAGTGCACCATTCAGGAt.............................................................................................................................................................................................................. 30 t 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.....TCCGATGCCTACTACTGTAAAGAGagc.......................................................................................................................................................................................................................... 27 agc 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCTTCTGATCTGGGCTGTGGAGATTGCAGT................................................................................................ 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................AAAGAGTGCACCATTCAGGAGAAGGAT........................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................TGTAAAGAGTGCACCATTCAGGAGA............................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..............................................................................................................................TTCTGATCTGGGCTGTGGAGATTGCAt................................................................................................. 27 t 1.00 28.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TTCTGATCTGGGCTGTGGAGATTGCAtt................................................................................................ 28 tt 1.00 28.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................................................TGTGAGTGTAGGCTGAGC....................................................................................................................................................................................... 18 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................GATCTGGGCTGTGGAGATTGCAGTG............................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....CTCCGATGCCTACTACTGTA.................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
....................TGTAAAGAGTGCACCATTCAGGAGAAGGA......................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TGGAGATTGCAGTGTTCAGCTAGTT.................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
................................................................................................................TCCATGGCCACCTCTTCTGATCTGGGC............................................................................................................... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TTCTGATCTGGGCTGTGGAGATTGCAG................................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................GTAAAGAGTGCACCATTCAGGAGAAGGA......................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................AATAAAGAGCAGTTACTCTGTATCAGGGC......... 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................ACTGTAAAGAGTGCACCATTCAGGAG.............................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
....................................................................................................................................................TGCAGTGTTCAGCTAGTTA................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
....................................................................................................................................TCTGGGCTGTGGAGATTGCAGTGTT............................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............TACTACTGTAAAGAGTGCACCATTCA.................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................GATTGCAGTGTTCAGCTAGTTATCTA............................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..............TACTACTGTAAAGAGTGCACCATTCAGGA............................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................TAAAGAGTGCACCATTCAGGAGAAGGAT........................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................TGTGGAGATTGCAGTGTTCAGC......................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................TCTAGGTAATTTCTTCAAGCCTGTGAGC....................................................... 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................CTGATCTGGGCTGTGGAGATTGCAGT................................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TGATCTGGGCTGTGGAGATTGCAG................................................................................................. 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TGATCTGGGCTGTGGAGATTGCAGT................................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCTTCTGATCTGGGagcg............................................................................................................ 18 agcg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.....TCCGATGCCTACTACTGTAAAGAGTGCA......................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................TACTGTAAAGAGTGCACCATTCAGGAGAAGGt......................................................................................................................................................................................................... 32 t 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................TGTAAAGAGTGCACCATTCAGGAGAAG........................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................ATCTGGGCTGTGGAGATT..................................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -

Antisense strand
GAGTCTCCGATGCCTACTACTGTAAAGAGTGCACCATTCAGGAGAAGGATGTGAGTGTAGGCTGAGCTTCCTACCCGCTCTTCTCTTCCTTTTACTTTGAACCATTTTGCCATCCATGGCCACCTCTTCTGATCTGGGCTGTGGAGATTGCAGTGTTCAGCTAGTTATCTAGGTAATTTCTTCAAGCCTGTGAGCCAAACTGGGTGTGGTCTAATAAAGAGCAGTTACTCTGTATCAGGGCAGAATGGAA
....................................................(((((((((........)))))..))))..........................((((..(((((((((...((....))....)))))))))....)))).................................................................................................
..................................................51.......................................................................................................156............................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT3()
Testes Data. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
............................................................................................................................................................................TTTCTTCAAGCCTGTgagg........................................................... 19 gagg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.................TACTGTAAAGAGTGCACCATTCAGGA............................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -