(5)
OTHER.mut
(7)
PIWI.ip
(3)
PIWI.mut
(1)
TDRD1.ip
(31)
TESTES

Sense strand
GTGTATCCATGGAGACAAGAGTCAACCAGAAAGAGATTGGGTACTTAATGGTAAGAACAAAACTGAGCTGCTACTTTTTTTTGAGATAGGATTTCACTGTGTGGATCAGGCAGGCCTTGAACTCAAAGAAATCCACCTACCTCTGCCTCCCGGGTGTTATCTGGGAATAAAAGTATGTGCTTCTATGCCTAACACAATAAAGGCTTTTGACAACTGTCATCTTAGCCACTGCATGTGTGCCTCCCCCCAA
..................................................((.(((.(((((..(((......)))..))))).....(((((((.((((.((...)).))))...(((....))).))))))).......)))))........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
...................................................................................................................CTTGAACTCAAAGAAATCCACCTACCTC........................................................................................................... 28 2 29.00 29.00 5.50 3.00 5.00 4.00 1.50 2.00 3.00 0.50 1.00 1.50 - - - - - - 0.50 0.50 - - - - - - - 0.50 0.50 - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTACCT............................................................................................................ 27 2 13.50 13.50 1.50 1.50 2.00 2.00 0.50 0.50 1.00 0.50 1.50 1.00 - 0.50 - 0.50 - - 0.50 - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTAC.............................................................................................................. 25 2 10.50 10.50 2.00 0.50 2.00 0.50 - 3.50 0.50 - - - - 1.00 - - - - - - - - 0.50 - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCaaa........................................................................................................ 29 aaa 7.50 3.00 0.50 2.00 - - 2.00 0.50 - 1.00 - 0.50 - - - - - - - - - - - - - - - - - 0.50 - 0.50 -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCaat........................................................................................................ 29 aat 7.00 3.00 - 3.50 - - 2.50 - - 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................TTGAACTCAAAGAAATCCACCTACCTC........................................................................................................... 27 2 6.00 6.00 1.00 0.50 1.00 - 0.50 - - 0.50 0.50 0.50 - - - - - 1.50 - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTAC.............................................................................................................. 23 2 4.00 4.00 1.50 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - 0.50 - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTACC............................................................................................................. 26 2 4.00 4.00 1.50 - 0.50 - - 0.50 0.50 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACC............................................................................................................. 24 2 4.00 4.00 0.50 - - 0.50 1.00 0.50 - 0.50 - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................AACCAGAAAGAGATTGGGTACTTAATG........................................................................................................................................................................................................ 27 1 4.00 4.00 - - - - - - - 1.00 - - 1.00 - - - 2.00 - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTA............................................................................................................... 24 2 3.50 3.50 - - - 1.50 - 1.50 - - - - - - - - - - - - - - - - - - - - - - 0.50 - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTC........................................................................................................... 26 2 3.00 3.00 0.50 - 1.00 1.00 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................AGAAAGAGATTGGGTACTTAATGagt..................................................................................................................................................................................................... 26 agt 3.00 0.00 - - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - 1.00 - - - - - - -
....................................................................................................................TTGAACTCAAAGAAATCCACCTACCTCaat........................................................................................................ 30 aat 3.00 6.00 - 0.50 - - 1.00 - - - 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCT............................................................................................................ 25 2 2.50 2.50 - - 0.50 - - - 1.00 - 0.50 - - - - - - - - - - - - - - - 0.50 - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTACCTa........................................................................................................... 28 a 2.50 13.50 0.50 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................TTGAACTCAAAGAAATCCACCTACCTCaaa........................................................................................................ 30 aaa 2.00 6.00 - - - - - - 0.50 - - 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCat......................................................................................................... 28 at 2.00 3.00 - 0.50 - - - - - 1.00 - 0.50 - - - - - - - - - - - - - - - - - - - - -
.................................AGATTGGGTACTTAATG........................................................................................................................................................................................................ 17 1 2.00 2.00 - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTACt............................................................................................................. 26 t 1.50 10.50 0.50 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCaatt....................................................................................................... 30 aatt 1.50 3.00 - - - - 0.50 - - - - - 0.50 - - - - - - - - - 0.50 - - - - - - - - - -
....................................................................................................................TTGAACTCAAAGAAATCCACCTACCT............................................................................................................ 26 2 1.50 1.50 - - 0.50 - - - - 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - -
....................................................................................................................TTGAACTCAAAGAAATCCACCTAC.............................................................................................................. 24 2 1.50 1.50 - - 0.50 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
....................................................................................................................TTGAACTCAAAGAAATCCACCTAta............................................................................................................. 25 ta 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................AACCAGAAAGAGATTGGGTACTTAAT......................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................TTGAACTCAAAGAAATCCACCTACC............................................................................................................. 25 2 1.00 1.00 - - - - - - - - 0.50 0.50 - - - - - - - - - - - - - - - - - - - - -
................AAGAGTCAACCAGAAAGAGATTGGGTA............................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..................................................GTAAGAACAAAACTGAGCTGCTACTTTTTTTTG....................................................................................................................................................................... 33 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCata........................................................................................................ 29 ata 1.00 3.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................ATGGTAAGAACAAAACTGAGCT..................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................AGAAAGAGATTGGGTACTTAATGagtt.................................................................................................................................................................................................... 27 agtt 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTACCaaa.......................................................................................................... 29 aaa 1.00 4.00 - - - - - - - - - - - 0.50 - 0.50 - - - - - - - - - - - - - - - - -
.........TGGAGACAAGAGTCAACCAGA............................................................................................................................................................................................................................ 21 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTAa.............................................................................................................. 25 a 1.00 3.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................CAGAAAGAGATTGGGTACTTAATGa....................................................................................................................................................................................................... 25 a 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
........................ACCAGAAAGAGATTGGGTACTTAATG........................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................TGGGAATAAAAGTATGTGCTTCTATGCC............................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................GATTGGGTACTTAATGaga..................................................................................................................................................................................................... 19 aga 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACata............................................................................................................... 24 ata 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTaaa......................................................................................................... 28 aaa 1.00 2.50 - 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - -
............................GAAAGAGATTGGGTACTTAATGagtt.................................................................................................................................................................................................... 26 agtt 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
................AAGAGTCAACCAGAAAGAGATTGGG................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
....................................................................................................................TTGAACTCAAAGAAATCCACCTACCTCata........................................................................................................ 30 ata 0.50 6.00 - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCatt........................................................................................................ 29 att 0.50 3.00 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTACCTCaaaa....................................................................................................... 32 aaaa 0.50 29.00 - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTAactc........................................................................................................... 28 actc 0.50 3.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTAg.............................................................................................................. 25 g 0.50 3.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTa........................................................................................................... 26 a 0.50 2.50 - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTA............................................................................................................... 22 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCatg........................................................................................................ 29 atg 0.50 3.00 - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................TTGAACTCAAAGAAATCCACCTACCTCattt....................................................................................................... 31 attt 0.50 6.00 - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTACCTCaaa........................................................................................................ 31 aaa 0.50 29.00 - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCTACCaa........................................................................................................... 28 aa 0.50 4.00 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCata.......................................................................................................... 27 ata 0.50 4.00 - - - - - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCaag........................................................................................................ 29 aag 0.50 3.00 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCaata....................................................................................................... 30 aata 0.50 3.00 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGAACTCAAAGAAATCCACCTACCTCaaaa....................................................................................................... 30 aaaa 0.50 3.00 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACCT................................................................................................................ 23 7 0.29 0.29 - - 0.14 - - - - - - - - - - - - - - - 0.14 - - - - - - - - - - - -
...................................................................................................................CTTGAACTCAAAGAAATCCACC................................................................................................................. 22 8 0.25 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................AGGCAGGCCTTGAACTCAAA........................................................................................................................... 20 8 0.12 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.12

Antisense strand
GTGTATCCATGGAGACAAGAGTCAACCAGAAAGAGATTGGGTACTTAATGGTAAGAACAAAACTGAGCTGCTACTTTTTTTTGAGATAGGATTTCACTGTGTGGATCAGGCAGGCCTTGAACTCAAAGAAATCCACCTACCTCTGCCTCCCGGGTGTTATCTGGGAATAAAAGTATGTGCTTCTATGCCTAACACAATAAAGGCTTTTGACAACTGTCATCTTAGCCACTGCATGTGTGCCTCCCCCCAA
..................................................((.(((.(((((..(((......)))..))))).....(((((((.((((.((...)).))))...(((....))).))))))).......)))))........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
...............................................................................................................................TCCACCTACCTCTGCCTctta...................................................................................................... 21 ctta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................CAGGCCTTGAACTCAgtta............................................................................................................................. 19 gtta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................TCCACCTACCTCTGCCTcttt...................................................................................................... 21 cttt 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................AAGAAATCCACCTACCTCTGCCTCCC................................................................................................... 26 3 0.33 0.33 - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - -