| Gene: Gga1 | ID: uc007wrn.1_intron_11_0_chr15_78721932_f | SPECIES: mm9 |
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(4) OTHER.mut |
(1) OVARY |
(2) PIWI.ip |
(3) PIWI.mut |
(24) TESTES |
| CACCACCTTCAGGCACCAGCTCAGATAGTGTGGGGTGGGACAACTTCCAGGTAAGAGGGCTAAAGCTGGCTCTGCCTGTGGCAGCCCAGCCCCAGGGAAGGGAGGCTGGAGCCAGTAGCCTGAGAGGTGACAGGCAGGTGGGTCCTGGGACATGGCAGTACCATCCCAGCGAAGAGCCCAACAGTCTTTTCTAACCTCCAGCAGAGGTGCCTGGGCGTCAGCTTAGGGTCCTGATAGGACCACAGTTCCACCTTCAAGGTTCAGCTCTTCTTCCCTTAAACTTAAGGTCCCCCCAGTGTGGAGATCCATTTAGGTCCAGTGTTTTGCCTCATGGACAGGGAGTCTATTATCCTCTCTACTGTACCTCTCTCAGATGTCACCTGCAGGGAAGGGAGGGCCTCAGGACTCAGGAGGTGACCCTAACACTTTGGAGAGTCTCACACCTGTCTCCTTTGCCCACAGTCATCAGATGGCACTGAATCCTCAGTCCCTCCTCCAGCCCAGGCCCCCAG ...........................................................................................................................................................................................................................................................................................................................................................................((((((((((.......))).))))).))..((((...((((..((((..((((..((..((...))...))..)))).))))..))))..))))...................................................... ..........................................................................................................................................................................................................................................................................................................................................................................363................................................................................................462................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | mjTestesWT3() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTCAGGACTCAGGAGGTGA............................................................................................... | 24 | 1 | 23.00 | 23.00 | 4.00 | - | 6.00 | 1.00 | 4.00 | - | - | - | 1.00 | 2.00 | - | - | - | 1.00 | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTCAGGACTCAGGAGGT................................................................................................. | 22 | 1 | 8.00 | 8.00 | 1.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTCAGGACTCAGGAGGTG................................................................................................ | 23 | 1 | 4.00 | 4.00 | - | - | - | 1.00 | - | - | - | - | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTCAGGACTCAGGAGGTGAa.............................................................................................. | 25 | a | 2.00 | 23.00 | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCATCAGATGGCACTGAATCCTC........................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCCTCAGGACTCAGGAGGTGA............................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTCAGGACTCAGGAGGTGAt.............................................................................................. | 25 | t | 2.00 | 23.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TTCAGGCACCAGCTCAGATAGTGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTCAGGACTCAGGAGG.................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................AGGGAGGCTGGAGCCAGTAGC......................................................................................................................................................................................................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................GGGCCTCAGGACTCAGGAGGTGA............................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TCAGATAGTGTGGGGTGGGACAACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAGTCTCACACagag................................................................. | 19 | agag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATGGCACTGAATCCTCAGTCCCTCa.................. | 29 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................TCAGGACTCAGGAGGTGACCCT........................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................TCAGGACTCAGGAGGTGACCCTA.......................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................TCAGGACTCAGGAGGTGACCCTAAC........................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................CAACAGTCTTTTCTAACCTCCAGCAGAGGT................................................................................................................................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTCAGGACTCAGGAG................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................TCAGGACTCAGGAGGTGACCCat.......................................................................................... | 23 | at | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CACCACCTTCAGGCACCAGCTCAGATAGTGTGGGGTGGGACAACTTCCAGGTAAGAGGGCTAAAGCTGGCTCTGCCTGTGGCAGCCCAGCCCCAGGGAAGGGAGGCTGGAGCCAGTAGCCTGAGAGGTGACAGGCAGGTGGGTCCTGGGACATGGCAGTACCATCCCAGCGAAGAGCCCAACAGTCTTTTCTAACCTCCAGCAGAGGTGCCTGGGCGTCAGCTTAGGGTCCTGATAGGACCACAGTTCCACCTTCAAGGTTCAGCTCTTCTTCCCTTAAACTTAAGGTCCCCCCAGTGTGGAGATCCATTTAGGTCCAGTGTTTTGCCTCATGGACAGGGAGTCTATTATCCTCTCTACTGTACCTCTCTCAGATGTCACCTGCAGGGAAGGGAGGGCCTCAGGACTCAGGAGGTGACCCTAACACTTTGGAGAGTCTCACACCTGTCTCCTTTGCCCACAGTCATCAGATGGCACTGAATCCTCAGTCCCTCCTCCAGCCCAGGCCCCCAG ...........................................................................................................................................................................................................................................................................................................................................................................((((((((((.......))).))))).))..((((...((((..((((..((((..((..((...))...))..)))).))))..))))..))))...................................................... ..........................................................................................................................................................................................................................................................................................................................................................................363................................................................................................462................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | mjTestesWT3() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .ACCACCTTCAGGCACCAGCTCAGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .......................................................................................................................................................................................................................................................................................................................GGTCCAGTGTTTTGCCTa....................................................................................................................................................................................... | 18 | a | 2.00 | 0.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................AGCCCAACAGTCTTTTC................................................................................................................................................................................................................................................................................................................................. | 17 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................CTGAGAGGTGACAGGagc.......................................................................................................................................................................................................................................................................................................................................................................................... | 18 | agc | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTCCTTTGCCCACAGTCATCA............................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................ACAGTCTTTTCTAACCTCCAGCA..................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..CCACCTTCAGGCACCAGCTCAGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................TCCTCTCTACTGTACCTCTCT.............................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................AACAGTCTTTTCTAACCTCCAGCAGAGGTGCC............................................................................................................................................................................................................................................................................................................. | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TCTCTACTGTACCTCTCTCAGATGT....................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................CCATTTAGGTCCAGTGTTT............................................................................................................................................................................................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTTTGCCCACAGTCATCAcg............................................ | 25 | cg | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................CCCAACAGTCTTTTCTAACCTCCAGCA..................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................TTATCCTCTCTACTGTACCTCTCTCA............................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................CAACTTCCAGGTAAGcta......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | cta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................................................................................................................................................GAAGAGCCCAACAGTCTTTTCTAACCTCCA........................................................................................................................................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................GCCCAGCCCCAGGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................. | 16 | 7 | 0.14 | 0.14 | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |