(6)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(25)
TESTES

Sense strand
CCTGCTCTCAGAAAAGAGACACTTGGCACATGGCATTCTTGCCCCAGGGAGCCCCAGGGACAGAGGGTAGCGCCAAGAAGACTGCTGAAGTAGGCAGTAGTTTGGGTAGAGACTGACAGCAGAGGGACCCACAGGGCATCAAGGCATACCGCTGTGAGGCCTGTGATAAGAGCTTCAAGTACAACTCTCTTCTACTACAGCGCCAGCGCATCCACACGGGAGAAGCCCTACGCCTGCCGCGAGTGCCGCA
................................................................................((((((......)))))).((((((((.....(((....)))....))))...((((.(((.(((.....))).))).)))).......)))).............................................................................
................................................................................81..............................................................................................177.......................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
.....................................................................................TGAAGTAGGCAGTAGTTTGGGTAGAG........................................................................................................................................... 26 1 5.00 5.00 - 1.00 1.00 - - 2.00 - - - - 1.00 - - - - - - - - - - - - - - -
..................................................................................................AGTTTGGGTAGAGACTGACAGCAGAGG............................................................................................................................. 27 1 5.00 5.00 - 1.00 2.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - -
......................................................................................................TGGGTAGAGACTGACAGCAGAGGGACCC........................................................................................................................ 28 1 4.00 4.00 - - 3.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TGGGTAGAGACTGACAGCAGAGGGACC......................................................................................................................... 27 1 4.00 4.00 - 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - -
.................................................................................................TAGTTTGGGTAGAGACTGACAGCAGA............................................................................................................................... 26 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................TACCGCTGTGAGGCCTGTGATAAGAGC............................................................................. 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................GTAGCGCCAAGAAGACTGCTGAAGTA.............................................................................................................................................................. 26 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TCCACACGGGAGAAGCCCTACGCCTG.............. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................TTGGGTAGAGACTGACAGCAGAGGGACC......................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.............................................................................................................AGACTGACAGCAGAGGGACCCACAGG................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................TTGGGTAGAGACTGACAGCAGAGG............................................................................................................................. 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........AAAAGAGACACTTGGCACATGGCAT...................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...................................................................................................................................................................................TACAACTCTCTTCTACTACAGCGCCAG............................................ 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
........................................................................................................GGTAGAGACTGACAGCAGAGGGACCCA....................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................TAAGAGCTTCAAGTACAACTCTCTTCTAC....................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............AAAGAGACACTTGGCACATGGCATTCT................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TCCACACGGGAGAAGCCCTACGCCTGCCG........... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TGGGTAGAGACTGACAGCAGAGGGAC.......................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................GTTTGGGTAGAGACTGACAGCAGAG.............................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
........CAGAAAAGAGACACTTGGCACATGGCATT..................................................................................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................CTGACAGCAGAGGGACCCACAGGGCATC.............................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................TTGGGTAGAGACTGACAGCAGAG.............................................................................................................................. 23 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................................................................TGAAGTAGGCAGTAGTTTGGGTAGAGt.......................................................................................................................................... 27 t 1.00 5.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................TGCTGAAGTAGGCAGagtc..................................................................................................................................................... 19 agtc 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...................................................................................................................................................................TGATAAGAGCTTCAAGTACAACTCTC............................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................TTCAAGTACAACTCTCTgtgt........................................................ 21 gtgt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.....................................................................................................TTGGGTAGAGACTGACAGCAGAGGG............................................................................................................................ 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................TGAAGTAGGCAGTAGTTTGGGTAG............................................................................................................................................. 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................ACTGACAGCAGAGGGACCCACAGGGCAT............................................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................GTAGCGCCAAGAAGACTGCTGAAGTAG............................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................................................................................................................TTCAAGTACAACTCTCTTCTACTACAGCGC............................................... 30 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................ACTGACAGCAGAGGGACCCACAGGGCA................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................TGAAGTAGGCAGTAGTTTGGGTAGA............................................................................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........CAGAAAAGAGACACTTGGCACATGGCAT...................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................TACTACAGCGCCAGCGCATCCACACGG............................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.............................................................................................................................................................................TTCAAGTACAACTCTCTTCTACTACAGC................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CCTGCTCTCAGAAAAGAGACACTTGGCACATGGCATTCTTGCCCCAGGGAGCCCCAGGGACAGAGGGTAGCGCCAAGAAGACTGCTGAAGTAGGCAGTAGTTTGGGTAGAGACTGACAGCAGAGGGACCCACAGGGCATCAAGGCATACCGCTGTGAGGCCTGTGATAAGAGCTTCAAGTACAACTCTCTTCTACTACAGCGCCAGCGCATCCACACGGGAGAAGCCCTACGCCTGCCGCGAGTGCCGCA
................................................................................((((((......)))))).((((((((.....(((....)))....))))...((((.(((.(((.....))).))).)))).......)))).............................................................................
................................................................................81..............................................................................................177.......................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
...................................................................................................................................................................................TACAACTCTCTTCTACTACAGCGCCA............................................. 26 1 6.00 6.00 1.00 1.00 - - - 2.00 - - - - 1.00 - - - - - - - - - - - - - - 1.00
..........................................................................................................................................................................AGCTTCAAGTACAACTCTCTTCTACTA..................................................... 27 1 3.00 3.00 - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - 1.00 - -
.....................................................................................................................................................................................CAACTCTCTTCTACTACAGCGCCAG............................................ 25 1 3.00 3.00 - - - - - - - 3.00 - - - - - - - - - - - - - - - - - -
..............................................................................................CAGTAGTTTGGGTAGAGACTGACAGCA................................................................................................................................. 27 1 3.00 3.00 - - - - - - - - 3.00 - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................ACAACTCTCTTCTACTACAGCGCCA............................................. 25 1 3.00 3.00 1.00 - - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................................................................................................................TCTACTACAGCGCCAGCGCATCCACA.................................. 26 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................GCAGAGGGACCCACAGGGCATCAAGGCA........................................................................................................ 28 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
..................ACACTTGGCACATGGCATTCTTGCCCCA............................................................................................................................................................................................................ 28 1 2.00 2.00 - - - - - - - - - - - - - - 2.00 - - - - - - - - - - -
.......TCAGAAAAGAGACACTTGGCACATGGCA....................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................ACTCTCTTCTACTACAGCGCCAGCGCA........................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................AGAGCTTCAAGTACAACTCTCTTCTACTACA................................................... 31 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................CAGAGGGACCCACAGGGCATCAAGGCA........................................................................................................ 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................GCTTCAAGTACAACTCTCTTCTACTACA................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................CTCTTCTACTACAGCGCCAGCGCATCCA.................................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................GCCAAGAAGACTGCTGAAGTAGGCAGTAGT..................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.......................................................................GCCAAGAAGACTGCTGAAGTAGGCAGTA....................................................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................ACAGAGGGTAGCGCCAAGAAGACTGCTG................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................CGCATCCACACGGtggg............................... 17 tggg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................ACAACTCTCTTCTACTACAGCGCCAGC........................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TTCTACTACAGCGCCAGCGCATCCAaa.................................... 27 aa 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...............................................................................................................................................................................CAAGTACAACTCTCTTCTACTACAGCGCCA............................................. 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................AACTCTCTTCTACTACAGCGCCAGCGCA........................................ 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................AGCGCCAAGAAGACTGCTGAAGTAGGCA.......................................................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................GAGCCCCAGGGACAGAGGGTAGCGCCAAGAA........................................................................................................................................................................... 31 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................GCGCCAGCGCATCCACACGGGAGAA.......................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................AAGAGCTTCAAGTACAACTCTCTTCTA........................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
........CAGAAAAGAGACACTTGGCACATGGCA....................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
....................................................................................................................................................................................ACAACTCTCTTCTACTACAGCGCCAGCGCA........................................ 30 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................................................................AACTCTCTTCTACTACAGCGCCAGCG.......................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................CATACCGCTGTGAGGCCTGTGATAAGAGC............................................................................. 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................CAGCAGAGGGACCCACAGGGCATCA............................................................................................................. 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........CAGAAAAGAGACACTTGGCA.............................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
............................................................CAGAGGGTAGCGCCAAGAAGACTGCTG................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................GAGGCCTGTGATAAGAGCTTCAAGTACA................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
........................................................................................................................................................................................CTCTCTTCTACTACAGCGCCAGC........................................... 23 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................CCAGCGCATCCACgact................................... 17 gact 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
................................................GAGCCCCAGGGACAGAGGGTAGCGCCA............................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................CTACTACAGCGCCAGCGCATCCACA.................................. 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.................................................................................................GTTTGGGTAGAGACTGag....................................................................................................................................... 18 ag 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
............................................................................................................................................................AGGCCTGTGATAAGAGCTTCAAGTA..................................................................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -