(3)
OTHER.mut
(7)
PIWI.ip
(2)
PIWI.mut
(28)
TESTES

Sense strand
GTGGCTGAGTGAGAGAGTCACTCAAAGAGATGAGCATACAGTGGACCAGAGGCTCTGAGCTCAGCTTATAGGCCTGGGGCTAGAGCTCTGGGGAGTCCACTTTAGTCTGAGGGGCTCATCATGTGAGCAGCTGGAAAGACAGTGGAGCTGCAGAGAGCTAAGAGCTGCCTCTGACCTGTTGTTCATGCTTTTGCCTCCAGAAGCAAGACGACCGTGGTTCTGTCTGCTTGATGCAGCTTCGTACGCAGGA
..................................................................................................................................(((((..((.((((((((..(((((.((........))))))).......)))).)))).))...)))))..................................................
..............................................................................................................................127......................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037902(GSM510438)
testes_rep3. (testes)
.........................................................................................................................................................................................................AGCAAGACGACCGTGGTTCTGTCTGC....................... 26 1 10.00 10.00 - - - 1.00 5.00 - - - - 1.00 1.00 2.00 - - - - - - - - - - - - - - - -
......................................................................................................TAGTCTGAGGGGCTCATCATGTGAGCAGC....................................................................................................................... 29 1 6.00 6.00 - - - - - - 6.00 - - - - - - - - - - - - - - - - - - - - -
.........TGAGAGAGTCACTCAAAGAGATGAGCAT..................................................................................................................................................................................................................... 28 1 5.00 5.00 - 1.00 - 2.00 - - - - 1.00 - - - - - - - - 1.00 - - - - - - - - - -
...................................................................................................................................TGGAAAGACAGTGGAGCTGCAGAGAGC............................................................................................ 27 1 5.00 5.00 1.00 - - - - - - 1.00 2.00 - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................................................................................................................TCCAGAAGCAAGACGACCGTGGTTCT............................. 26 1 4.00 4.00 - - - 4.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................TACAGTGGACCAGAGGCTCTGAGCTC............................................................................................................................................................................................ 26 1 3.00 3.00 1.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................AGCAAGACGACCGTGGTTCTGTCTGCTTG.................... 29 1 3.00 3.00 - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - 1.00 -
..............................TGAGCATACAGTGGACCAGAGGCTCTGAGC.............................................................................................................................................................................................. 30 1 3.00 3.00 - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - - -
.....................TCAAAGAGATGAGCATACAGTGGACC........................................................................................................................................................................................................... 26 1 3.00 3.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - -
................................................................................................................................................................................................................CGACCGTGGTTCTGTCTGCTTGATGC................ 26 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...........................................................................................................................TGAGCAGCTGGAAAGACAGTGGAGCTa.................................................................................................... 27 a 2.00 0.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................AGCAAGACGACCGTGGTTCTGTCTGCT...................... 27 1 2.00 2.00 - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................CAGAAGCAAGACGACCGTGGTTCTG............................ 25 1 2.00 2.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................................................TGGAAAGACAGTGGAGCTGCAGAGA.............................................................................................. 25 1 2.00 2.00 - - - - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - -
......................................................................................................................................................................................................................TGGTTCTGTCTGCTTGATGCAGCTTCGT........ 28 1 2.00 2.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................TACAGTGGACCAGAGGCTCTGAGC.............................................................................................................................................................................................. 24 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TGTGAGCAGCTGGAAAGACAGTGGAGC...................................................................................................... 27 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................TGGAAAGACAGTGGAGCTGCAGAGAGCT........................................................................................... 28 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................AAGAGATGAGCATACAGTGGACCAGA........................................................................................................................................................................................................ 26 1 2.00 2.00 - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - -
......................................CAGTGGACCAGAGGCTCTGAGa.............................................................................................................................................................................................. 22 a 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TGCCTCCAGAAGCAAGACGACCGTGGTT............................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................TGGAAAGACAGTGGAGCTGCAGAGAGCTA.......................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TGGTTCTGTCTGCTTGATGCAGCTTC.......... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.........................................................................................................................................................................................................AGCAAGACGACCGTGGTTCTGTCTGt....................... 26 t 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TGACCTGTTGTTCATGCTTTTGCCTCCAGA................................................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..............................................................................................................................................................TAAGAGCTGCCTCTGACCTGTTGTTC.................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..................................................................TATAGGCCTGGGGCTAGAGCTCTGGGG............................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
................................AGCATACAGTGGACCAGAGGCTCTGA................................................................................................................................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................AAAGACAGTGGAGCTGCAGAGAGCT........................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................AAGCAAGACGACCGTGGTTCTGTCTGC....................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................AGCAAGACGACCGTGGTTCTGT........................... 22 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................TACAGTGGACCAGAGGCTCTGAGCTCAGa......................................................................................................................................................................................... 29 a 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..................................................................TATAGGCCTGGGGCTAGAGCTCTGG............................................................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................AGAGATGAGCATACAGTGGACCAGAGG...................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TGCCTCCAGAAGCAAGACGACCGTGG................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TGTGAGCAGCTGGAAAGACAGTG.......................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..........................................................................................................................................ACAGTGGAGCTGCAGAGAGCTAAGAGC..................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TGGTTCTGTCTGCTTGATGCAGCTTCG......... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TGGTTCTGTCTGCTTGATGCAGCTTCGTA....... 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................TCAAAGAGATGAGCATACAGTGGACCA.......................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................TGGAAAGACAGTGGAGCTGCAGAGAG............................................................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGAGAGAGTCACTCAAAGAGATGAGCA...................................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TGGTTCTGTCTGCTTGATGCAG.............. 22 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................GTGGAGCTGCAGAGAGCTAAGAGCTGC.................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................TACAGTGGACCAGAGGCTCTGAGCTCA........................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................TCAAAGAGATGAGCATACAGTGGACCAGAG....................................................................................................................................................................................................... 30 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................TACAGTGGACCAGAGGCTCTGAGCTCAG.......................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................AAGAGATGAGCATACAGTGGACCAGAGG...................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................CAGTGGAGCTGCAGAGAGCTAAGAGC..................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................TGAGCATACAGTGGACCAGAGGCTCg.................................................................................................................................................................................................. 26 g 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.........................AGAGATGAGCATACAGTGGACCAGAG....................................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TGACCTGTTGTTCATGCTTTTGCCTCC.................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................TACAGTGGACCAGAGGCTCTGAGCTCAGC......................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.................................GCATACAGTGGACCAGAGGCTCTGAGC.............................................................................................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................TGAGCATACAGTGGACCAGAGGC..................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
......................................................................................................................................AAAGACAGTGGAGCTGCAGAGAGCTA.......................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................AGCAAGACGACCGTGGTTCTGTCTGCTTGA................... 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................CTGGAAAGACAGTGGAGCTGCAGAGA.............................................................................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................AAGCAAGACGACCGTGGTTCTGT........................... 23 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................CAAGACGACCGTGGTTCTGTC.......................... 21 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGAGAGAGTCACTCAAAGAGATGAGCATA.................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
......................CAAAGAGATGAGCATACAGTGGACC........................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -

Antisense strand
GTGGCTGAGTGAGAGAGTCACTCAAAGAGATGAGCATACAGTGGACCAGAGGCTCTGAGCTCAGCTTATAGGCCTGGGGCTAGAGCTCTGGGGAGTCCACTTTAGTCTGAGGGGCTCATCATGTGAGCAGCTGGAAAGACAGTGGAGCTGCAGAGAGCTAAGAGCTGCCTCTGACCTGTTGTTCATGCTTTTGCCTCCAGAAGCAAGACGACCGTGGTTCTGTCTGCTTGATGCAGCTTCGTACGCAGGA
..................................................................................................................................(((((..((.((((((((..(((((.((........))))))).......)))).)))).))...)))))..................................................
..............................................................................................................................127......................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037902(GSM510438)
testes_rep3. (testes)