| Gene: Pdzd2 | ID: uc007vhr.1_intron_6_0_chr15_12475275_r.3p | SPECIES: mm9 |
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(1) OTHER.ip |
(3) OTHER.mut |
(4) PIWI.ip |
(1) PIWI.mut |
(21) TESTES |
| TACAACTGGCATGGCTCTGTCCAGAGCTGCTCTGACACAGCAGGGAAAAGAGGTAGCAGACTCCTGGCCTTCACCTGAAGTCTAGGACGAAAGGAGACAGTTTGGGGGGTCTGATGGCTTTATACACTGACACTCAGCCAGCCCACCTGCATTTGGGGAGTACCCTTGTCTAACTGACACGTGTCACTCTTAATTCCCAGGGCTCTCTGGGATGCTGAGGATGAAGGACTGTAAGTAGGCTTCCAGCCCC .........................................................(((((((((((..((.(((...(((...)))...))).))..)))..)))))))).......................................................................................................................................... .................................................50............................................................112........................................................................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT3() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................TAGGACGAAAGGAGACAGTTTGGGGG.............................................................................................................................................. | 26 | 1 | 11.00 | 11.00 | 4.00 | 1.00 | 1.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTGGGGGG............................................................................................................................................. | 27 | 1 | 11.00 | 11.00 | 2.00 | 5.00 | - | 2.00 | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................TGAAGTCTAGGACGAAAGGAGACAGT..................................................................................................................................................... | 26 | 1 | 9.00 | 9.00 | 2.00 | 3.00 | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .......................................................................................................................................................................................................................TGAGGATGAAGGACTGTAAGTAGGCTT........ | 27 | 1 | 9.00 | 9.00 | 1.00 | 1.00 | - | - | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTGGGG............................................................................................................................................... | 25 | 1 | 7.00 | 7.00 | 3.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGGGATGCTGAGGATGAAGGACTG................... | 24 | 1 | 7.00 | 7.00 | 1.00 | - | 1.00 | - | 1.00 | - | - | 3.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGGGATGCTGAGGATGAAGGACTGT.................. | 25 | 1 | 7.00 | 7.00 | 4.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGGGATGCTGAGGATGAAGGACTGTAAGT.............. | 29 | 1 | 5.00 | 5.00 | 3.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTGGG................................................................................................................................................ | 24 | 1 | 3.00 | 3.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................TCTGGGATGCTGAGGATGAAGGACTGT.................. | 27 | 1 | 3.00 | 3.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................TGAAGTCTAGGACGAAAGGAGACAG...................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ................................TGACACAGCAGGGAAAAGAGGTAGC................................................................................................................................................................................................. | 25 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................ATGCTGAGGATGAAGGACTGTAAGTAGGC.......... | 29 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TGCTGAGGATGAAGGACTGTAAGTAGG........... | 27 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................GAAGTCTAGGACGAAAGGAGACAGT..................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................GATGAAGGACTGTAgctt............. | 18 | gctt | 2.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTGGGGGt............................................................................................................................................. | 27 | t | 2.00 | 11.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTGGGGGGT............................................................................................................................................ | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................CTGAGGATGAAGGACTGTAAGTAGGCTT........ | 28 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTGG................................................................................................................................................. | 23 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TGCTCTGACACAGCAGGGAAAAGAGGTA................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTG.................................................................................................................................................. | 22 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTGGGGGGTC........................................................................................................................................... | 29 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TGCTCTGACACAGCAGGGAAAAGAGGT.................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................GGATGCTGAGGATGAAGGACTGTAAGT.............. | 27 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGGGATGCTGAGGATGAAGGACTGTAAGa.............. | 29 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TACACTGACACTCAGCCAGCCCACCTGCATT................................................................................................. | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................TGAAGTCTAGGACGAAAGGAGACAGa..................................................................................................................................................... | 26 | a | 1.00 | 3.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGGGATGCTGAGGATGAAGGACTGTA................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................GAGGATGAAGGACTGTAAGTAGGCTT........ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TGCTGAGGATGAAGGACTGTAAGTAGGC.......... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................GGATGAAGGACTGTAAGTAGGCTTCC...... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTGGGGt.............................................................................................................................................. | 26 | t | 1.00 | 7.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................CTGGGATGCTGAGGATGAAGGAC..................... | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................TATACACTGACACTCAGCCAGCCCACCTGC.................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................TGACACAGCAGGGAAAAGAGGTAGCAG............................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................ATGCTGAGGATGAAGGACTGTAAGTA............. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTttgg............................................................................................................................................... | 25 | ttgg | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TCTCTGGGATGCTGAGGATGAAGGAC..................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................TCTGACACAGCAGGGAAAAGAGGTAG.................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................AGGACGAAAGGAGACAGTTTGGGGG.............................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................TGACACAGCAGGGAAAAGAGGTAG.................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................TGTCCAGAGCTGCTCTGACACAGCAGGta............................................................................................................................................................................................................ | 29 | ta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................TCACCTGAAGTCTAGGACGAAAGGAGAC........................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................AAGTCTAGGACGAAAGGAGACAGTTT................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................TCTGGGATGCTGAGGATGAAGGACT.................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................CCAGGGCTCTCTGGGATGCTGAGG.............................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................TGACACAGCAGGGAAAAGAGGTAGCAGA.............................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TGAGGATGAAGGACTGTAAGTAGGCTTC....... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................GGATGAAGGACTGTAAGTAGGCTTCCAGC... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................GCTGAGGATGAAGGACTGTAAGTAG............ | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................GGGAAAAGAGGTAGCAGACTCCTGGtc..................................................................................................................................................................................... | 27 | tc | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................TATACACTGACACTCAGCCAGCCCAC........................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................................AGCAGACTCCTGGCCTTCACCTGA............................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TGCTGAGGATGAAGGACTGTAAGTA............. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TGCTCTGACACAGCAGGGAAAAGAGGTAGC................................................................................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TGCTGAGGATGAAGGACTGTAAGTAGGCTTC....... | 31 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TAGGACGAAAGGAGACAGTTTGGGGa.............................................................................................................................................. | 26 | a | 1.00 | 7.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................GGATGAAGGACTGTAAGTAGGCTTC....... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................TGTCCAGAGCTGCTCTGACACAGCAGGG............................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................TGTCCAGAGCTGCTCTGACACAGCAGGGA............................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TGAGGATGAAGGACTGTAAGTAGGC.......... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................TCTGGGATGCTGAGGATGAAGGACTt................... | 26 | t | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................TCTGGGATGCTGAGGATGAAGGACTG................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TGAGGATGAAGGACTGTAAGTAGGCT......... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ............................................................................................................................................................................................................CTCTGGGATGCTGAGG.............................. | 16 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |
| TACAACTGGCATGGCTCTGTCCAGAGCTGCTCTGACACAGCAGGGAAAAGAGGTAGCAGACTCCTGGCCTTCACCTGAAGTCTAGGACGAAAGGAGACAGTTTGGGGGGTCTGATGGCTTTATACACTGACACTCAGCCAGCCCACCTGCATTTGGGGAGTACCCTTGTCTAACTGACACGTGTCACTCTTAATTCCCAGGGCTCTCTGGGATGCTGAGGATGAAGGACTGTAAGTAGGCTTCCAGCCCC .........................................................(((((((((((..((.(((...(((...)))...))).))..)))..)))))))).......................................................................................................................................... .................................................50............................................................112........................................................................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT3() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................CCAGCCCACCTGCATatg.................................................................................................. | 18 | atg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..............................................................................................................TGGCTTTATACACTctga.......................................................................................................................... | 18 | ctga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |