| Gene: Slc1a3 | ID: uc007vez.1_intron_1_0_chr15_8637813_r | SPECIES: mm9 |
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(5) OTHER.mut |
(15) TESTES |
| GATGCTGCAGATGCTGGTCTTGCCCCTGATCATCTCCAGTCTCGTCACAGGTACCGGACACGGACAGGTTTTGCTGTGTGTTTTCTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTAAGTGTGCTTTTTGCAAAAGAACGCTTAGAAAAGTCAATGCTTTAGGTTTCTGCTGGATGCATGCTCTGTTCTTGAAAAAAAAAAAAGAAAAAGAAAAAGTCCCTTGGAAACGGTGGAAAGGATGCTTTACTAATGCATGAATGCTTATGGACTCTCGCATTTTTACCAATCACAAGAGGAAATGGATTTAAACAGCCACGTAATCTGGTCTGCCTCACCGTGAATGAGGTGCCCTGCTAAACACCACACAAACAGCCTTTCTCTGACCACAGTGATGTAGTTGACAACAGCGTACAACAGGTCTGTTTTCTCACCCTCTTATCCCACCCAGATAACATCTGGTTGGACAGCCTATTAGCTATTGATGCAAGAATGCTTGTT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR037902(GSM510438) testes_rep3. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................CCGGACACGGACAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 15 | 3 | 61.67 | 61.67 | 24.67 | 15.33 | 1.00 | 6.67 | 1.67 | 4.67 | 3.00 | 2.00 | 0.33 | 0.33 | 1.33 | - | - | - | 0.67 |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAGCCTATTAGCTATTGATGCAAG.......... | 28 | 1 | 5.00 | 5.00 | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................ACCGGACACGGACAGGa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | a | 3.00 | 0.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................CCGGACACGGACAGGacga....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | acga | 2.67 | 61.67 | - | - | - | - | 2.67 | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTACCGGACACGGACAGGa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | a | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................CCCTGATCATCTCCAtagt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | tagt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ....................................................ACCGGACACGGACAGGatt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 19 | att | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................GACACGGACAGGTTTgaca.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | gaca | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................CCGGACACGGACAGt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 15 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................CCGGACACGGACAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................CGGACACGGACAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 15 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................CCGGACACGGACAGGgaag....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | gaag | 0.67 | 61.67 | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................CCGGACACGGACAGGac......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | ac | 0.33 | 61.67 | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - |
| .....................................................CCGGACACGGACAGGactg....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | actg | 0.33 | 61.67 | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - |
| .....................................................CCGGACACGGACAGGgcgg....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | gcgg | 0.33 | 61.67 | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................CCGGACACGGACAGGaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 18 | aat | 0.33 | 61.67 | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - |
| .....................................................CCGGACACGGACAGGg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 16 | g | 0.33 | 61.67 | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - |
| .....................................................CCGGACACGGACAGGata........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 18 | ata | 0.33 | 61.67 | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - |
| .....................................................CCGGACACGGACAGGaaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | aaaa | 0.33 | 61.67 | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - |
| GATGCTGCAGATGCTGGTCTTGCCCCTGATCATCTCCAGTCTCGTCACAGGTACCGGACACGGACAGGTTTTGCTGTGTGTTTTCTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTAAGTGTGCTTTTTGCAAAAGAACGCTTAGAAAAGTCAATGCTTTAGGTTTCTGCTGGATGCATGCTCTGTTCTTGAAAAAAAAAAAAGAAAAAGAAAAAGTCCCTTGGAAACGGTGGAAAGGATGCTTTACTAATGCATGAATGCTTATGGACTCTCGCATTTTTACCAATCACAAGAGGAAATGGATTTAAACAGCCACGTAATCTGGTCTGCCTCACCGTGAATGAGGTGCCCTGCTAAACACCACACAAACAGCCTTTCTCTGACCACAGTGATGTAGTTGACAACAGCGTACAACAGGTCTGTTTTCTCACCCTCTTATCCCACCCAGATAACATCTGGTTGGACAGCCTATTAGCTATTGATGCAAGAATGCTTGTT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR037902(GSM510438) testes_rep3. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................GCCCCTGATCATCTCCAGTCTCGTCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................................................................................TTCCTTCCTTCCTTTCTTttt.......................................................................................................................................................................................................................................................................................................................................................................................................................... | 21 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........................CTGATCATCTCCAGTCTCGTCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |