| Gene: Ptger4 | ID: uc007vcy.1_intron_1_0_chr15_5193196_r | SPECIES: mm9 |
|
|
|
(7) OTHER.mut |
(3) PIWI.ip |
(1) PIWI.mut |
(20) TESTES |
| CTTGACAAGTTCCGCACTGCGTGGGAAGAGACTGATGGCTGAGGTTGGAGGTAGGTCCTGAACATCTGAGGCCTGAGCCTTGGGCACACCGGGCTCCTAACCCCACCCTACAGGTAAGTCGGGATGGAGGTCTTTGCGTGTTCAGGCGCTCTTCCGGGAAACCAAAGAACAGAATGTCCCATAGTGTCCCAAAATGTCCATAACTTCTTTCGATGAGCATTTTATCCATTCTGTGGGGAATATCACTAGGGAGTCACTTTTCCCTTGAGAAGGGTCTTGCTCATCTCGGCGAGGGAATGAGCTGATTATGGAGCGGTGGGGGTGGGGATAGGCGGGAAATAAATATATTAATGTCAGCAGAGCGGTGCTCTTGACAGAACGGATCCAGACCTTGGGAATTTAAGTAGTCACAGTTAATGAGTAGCTACCGATGAGGAAGTTGGATCTGGGTGCTCTCCTTATCTCTGCGACACAGCATTTTGGCCATGGGTCGAACACCTTGCAAGTGGTAAATGGCTCGTTTCTCTTTCTCTCTAGGTACCATTCCTAGATCGAACCGTGAGCTCCAACGCTGTGTGTTACTAACC .....................................................((((((((((((..((((((.(((((.(((.....))))))))......((((((.((......)).))).))).))))))...))))))))).))).....((....))........................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................................................51......................................................................................................................171.............................................................................................................................................................................................................................................................................................................................................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT4() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesWT1() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................TCTTCCGGGAAACCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 11.00 | 11.00 | - | - | - | - | 7.00 | - | - | 1.00 | - | - | - | - | 2.00 | - | - | - | 1.00 | - | - | - |
| ......................................................................................................................................................CTTCCGGGAAACCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | 5 | 9.60 | 9.60 | 5.60 | 0.80 | 0.20 | - | - | - | - | - | - | 0.40 | 1.60 | - | - | 0.80 | - | - | - | - | - | 0.20 |
| .......................................................................................................................................................TTCCGGGAAACCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................... | 16 | 6 | 7.00 | 7.00 | 4.00 | 1.50 | - | - | - | - | - | - | 0.17 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | - |
| ...................................TGGCTGAGGTTGGAGGTAGGTCCTGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 5.00 | 5.00 | - | - | - | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TCCGGGAAACCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................... | 15 | 6 | 3.33 | 3.33 | 0.33 | - | 0.17 | - | - | - | - | - | 0.33 | 1.33 | 1.00 | - | - | 0.17 | - | - | - | - | - | - |
| ..............................................................................................................................................CAGGCGCTCTTCCGGcca........................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | cca | 3.00 | 0.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCATTCCTAGATCGAACCGTGAGC....................... | 26 | 1 | 3.00 | 3.00 | - | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCGAACCGTGAGCTCCAACGCTG............. | 27 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................CTTCCGGGAAACCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................... | 16 | 5 | 1.20 | 1.20 | 0.80 | 0.40 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................GAAGAGACTGATGGCTGAGGTTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACCGTGAGCTCCAACGCTGTG........... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTAGATCGAACCGTGAGCTCCAAC................. | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TGGCTGAGGTTGGAGGTAGGTCCTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................GGAAGAGACTGATGGCTGAGGTTGGtta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | tta | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................CCGGGAAACCAAAGtcta................................................................................................................................................................................................................................................................................................................................................................................................................................ | 18 | tcta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .TTGACAAGTTCCGCACTGCGTGGGAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................ACTGATGGCTGAGGacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 17 | acg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................AGAGACTGATGGCTGAGGTTGGAGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................GGTGCTCTTGACAGAACGGATCCAGACC.................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .......................................................TCCTGAACATCTGAGGCCTGAGCCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................TGCGTGGGAAGAGACTGATGGCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTAGATCGAACCGTGAGCTCCAACGC............... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................TTCCGGGAAACCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................... | 15 | 8 | 0.75 | 0.75 | 0.62 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................CTTCCGGGAAACCAAggt................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | ggt | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 |
| ......................................................................................................................................................CTTCCGGGAAACCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................... | 15 | 5 | 0.20 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTTGACAAGTTCCGCACTGCGTGGGAAGAGACTGATGGCTGAGGTTGGAGGTAGGTCCTGAACATCTGAGGCCTGAGCCTTGGGCACACCGGGCTCCTAACCCCACCCTACAGGTAAGTCGGGATGGAGGTCTTTGCGTGTTCAGGCGCTCTTCCGGGAAACCAAAGAACAGAATGTCCCATAGTGTCCCAAAATGTCCATAACTTCTTTCGATGAGCATTTTATCCATTCTGTGGGGAATATCACTAGGGAGTCACTTTTCCCTTGAGAAGGGTCTTGCTCATCTCGGCGAGGGAATGAGCTGATTATGGAGCGGTGGGGGTGGGGATAGGCGGGAAATAAATATATTAATGTCAGCAGAGCGGTGCTCTTGACAGAACGGATCCAGACCTTGGGAATTTAAGTAGTCACAGTTAATGAGTAGCTACCGATGAGGAAGTTGGATCTGGGTGCTCTCCTTATCTCTGCGACACAGCATTTTGGCCATGGGTCGAACACCTTGCAAGTGGTAAATGGCTCGTTTCTCTTTCTCTCTAGGTACCATTCCTAGATCGAACCGTGAGCTCCAACGCTGTGTGTTACTAACC .....................................................((((((((((((..((((((.(((((.(((.....))))))))......((((((.((......)).))).))).))))))...))))))))).))).....((....))........................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................................................51......................................................................................................................171.............................................................................................................................................................................................................................................................................................................................................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT4() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesWT1() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTGCGACACAGCATTTTGGCCA..................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGGCTCGTTTCTCTTTCTCTCTA................................................... | 27 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................AACTTCTTTCGATGAGCATTTTATCCA....................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................AGGTTGGAGGTAGGTCCTGAACATCTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCCTTATCTCTGCGACACAGCA.............................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................GCATTTTATCCATTCTGTGGGGAATATCA...................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................GCAGAGCGGTGCTCTTGACAGAACGGA............................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..........................................................................................................................................TGTTCAGGCGCTCTTCCGGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................TCGGCGAGGGAATGAGCTGATTATGGA................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................CCCAAAATGTCCATAAC............................................................................................................................................................................................................................................................................................................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCTCTTTCTCTCTAGGTACCA............................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCTTTCTCTCTAGGTACCATTCCT....................................... | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAGCTACCGtga............................................................................................................................................................. | 15 | tga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTGAGCTCCAACGCTGTGTGTTA...... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |