(6)
OTHER.mut
(1)
OVARY
(7)
PIWI.ip
(4)
PIWI.mut
(30)
TESTES

Sense strand
CGCTGGGGGCCGCGCTGATGTCCAGGGCGGCTTCGCGTGCGGCCGGAGGGGTGAGGGAGCGCGGGCGCGGCAGGGCTGGCTGGGTGAGGCGGCCGCGGGGCGGGGAGCGCGAGAGCCTCCGGGTGCGGGCGGCAGCGGCCGGAGGTCGAAGAGTGTTTTCCTTTCTGTGCTGCGAGCGGGCGGGCGGGTCGGGGAGGGGCCCTTTGGCCCTCCCGCCCGGGGGCCGCACTCCCACCCTGTCTGTTCAACCGACACCCCAAGTTTTCCGTGTTAAGGGGCGTCCTCTTACGTCCCGCGGCGTTTTCTCTCTCTCTCTTTTTTTTTTTTTTTGGGTCGGTCTGTCGCAGCTTTTAATCTTATTTGAGCCAGTTTCTAATGGCTGACCTGGTGCCTGTCGCGGGCTACTGAGGAGTTAGGCCCTAATCAAGTGCTTGCGGCAAATGGGACCCAATTGTTGAACCTCTCCCGGGTCGGATTTGTACTTGAGTGGTAACTACTTAGGAGAAATGTGAATCCCTTTCTAGATTCGAGGACGCGTTTACTCTTCGACTCAGCTGCGCGCTCTACTCATAAT


Size Perfect hit Total Norm Perfect Norm SRR014234(GSM319958)
Ovary total. (ovary)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
..................................................................................GGTGAGGCGGCCGCGagg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 agg 16.00 0.00 9.00 - - - - 2.00 2.00 - - - - - - - - 1.00 - - - - - - 1.00 - - 1.00 - - - - -
..............................................................................................................................................................TCCTTTCTGTGCTGCGAGCGGGCGG....................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 5.00 5.00 - - - - 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................GGTGAGGCGGCCGCGcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 cgg 4.00 0.00 2.00 - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................GCGGGCGGGTCGGGGg........................................................................................................................................................................................................................................................................................................................................................................................... 16 g 4.00 0.00 - - - - - - - - 4.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................CGGAGGGGTGAGGGAGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 19 1 3.00 3.00 - - - - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TCCTTTCTGTGCTGCGAGCGGGCGGGC..................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 3.00 3.00 - - 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGCGTTTACTCTTCGACTCAGC................... 26 1 2.00 2.00 - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................CCCGCCCGGGGGCCcgaa......................................................................................................................................................................................................................................................................................................................................................... 18 cgaa 2.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - 1.00 - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGAGGACGCGTTTACTCTTCGA......................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............TGATGTCCAGGGCGtctt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 18 tctt 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................TGTCCAGGGCGGCTTCGCGTGCGGCCa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 a 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TTCCTTTCTGTGCTGCGAGC............................................................................................................................................................................................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAATCCCTTTCTAGATTCGAGGACGa...................................... 29 a 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAATCCCTTTCTAGATTCGAGGAC........................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGGTAACTACTTAGGAGAAATGTG............................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCTTCGACTCAGCTGCGCGCTCTACTC..... 30 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................TTTCTAATGGCTGACCTGGTGCCTG.................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............TGATGTCCAGGGCGGCTTCGCGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 2 1.00 1.00 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.50 - -
...............TGATGTCCAGGGCGGCTTCGCGTGCat.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 at 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGATTCGAGGACGCGTTTAC................................ 24 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGATTCGAGGACGCGTTTACTCT............................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................GGCTGACCTGGTGCCTGTCGCGGGCTACT........................................................................................................................................................................ 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTCGGATTTGTACTTGAGTGGT................................................................................... 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............CTGATGTCCAGGGCGGCTTCGCGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 2 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTCAGCTGCGCGCTCTACTCA.... 25 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGATTTGTgaga.......................................................................................... 15 gaga 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGATTCGAGGACGCGTTTACTCTT............................ 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................CGAGCGGGCGGGCGGGTCGG.............................................................................................................................................................................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TCGAAGAGTGTTTTCCTTTCTGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TCGAAGAGTGTTTTCCTTTCTGTGCTGC................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................GGTGAGGCGGCCGCGcgc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 cgc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................CGAAGAGTGTTTTCCTTTCTGTGCT................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............TGATGTCCAGGGCGGCTTCGCGTGt...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 t 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................CTGCGAGCGGGCGGGtga................................................................................................................................................................................................................................................................................................................................................................................................... 18 tga 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCCCTTTCTAGATTCGAGGACGCGT.................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTTCTAGATTCGAGGACGCGTT................................... 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGAGGACGCGTTTACTCTT............................ 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TCCTTTCTGTGCTGCGAGCGG........................................................................................................................................................................................................................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGCTTGCGGCAAATGGGACCCt............................................................................................................................ 26 t 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAAGTGCTTGCGGCAAATGGGACCC............................................................................................................................. 29 2 0.50 0.50 - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGCTTGCGGCAAATGGG................................................................................................................................. 21 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.50 -
....................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAAGTGCTTGCGGCAAATGGGA................................................................................................................................ 26 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTGCTTGCGGCAAATGGGACC.............................................................................................................................. 25 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTGCTTGCGGCAAATGGGACCC............................................................................................................................. 26 2 0.50 0.50 - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -
.............................................................CGGGCGCGGCAGGGCTGGCTGGGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 25 2 0.50 0.50 - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGACCCAATTGTTGAAC.................................................................................................................. 19 7 0.14 0.14 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.14

Antisense strand
CGCTGGGGGCCGCGCTGATGTCCAGGGCGGCTTCGCGTGCGGCCGGAGGGGTGAGGGAGCGCGGGCGCGGCAGGGCTGGCTGGGTGAGGCGGCCGCGGGGCGGGGAGCGCGAGAGCCTCCGGGTGCGGGCGGCAGCGGCCGGAGGTCGAAGAGTGTTTTCCTTTCTGTGCTGCGAGCGGGCGGGCGGGTCGGGGAGGGGCCCTTTGGCCCTCCCGCCCGGGGGCCGCACTCCCACCCTGTCTGTTCAACCGACACCCCAAGTTTTCCGTGTTAAGGGGCGTCCTCTTACGTCCCGCGGCGTTTTCTCTCTCTCTCTTTTTTTTTTTTTTTGGGTCGGTCTGTCGCAGCTTTTAATCTTATTTGAGCCAGTTTCTAATGGCTGACCTGGTGCCTGTCGCGGGCTACTGAGGAGTTAGGCCCTAATCAAGTGCTTGCGGCAAATGGGACCCAATTGTTGAACCTCTCCCGGGTCGGATTTGTACTTGAGTGGTAACTACTTAGGAGAAATGTGAATCCCTTTCTAGATTCGAGGACGCGTTTACTCTTCGACTCAGCTGCGCGCTCTACTCATAAT


Size Perfect hit Total Norm Perfect Norm SRR014234(GSM319958)
Ovary total. (ovary)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
........................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGCCCTAATCgtag..................................................................................................................................................... 17 gtag 2.00 0.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................GTCGGTCTGTCGCAGCTTTTAATCTTA....................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAATCAAGTGCTTGCGGCAAt...................................................................................................................................... 23 t 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................GCTTTTAATCTTATTTGAGCCAGTTTCTAA...................................................................................................................................................................................................... 30 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................AGAGTGTTTTCCTTTCTGTGCTGCGA............................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..............................................................................................................................................AGGTCGAAGAGTGTTTTCCTTTCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................CCCTGTCTGTTCAACCGACACCCC............................................................................................................................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCCCTTTCTAGATTCGAGGACGCG..................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................GGTCGAAGAGTGTTTTCCTTTCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCGCGCTCTAC....... 16 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................CGACACCCCAAGTTTTCCGTGTTAA............................................................................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................GTCGGTCTGTCGCAggtc.................................................................................................................................................................................................................................... 18 ggtc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.......GGCCGCGCTGATGTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 0.50 0.50 - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................CTAATGGCTGACCTGGT......................................................................................................................................................................................... 17 5 0.20 0.20 - - - - - - - - - - - - 0.20 - - - - - - - - - - - - - - - - - -