| Gene: Chd8 | ID: uc007tou.1_intron_9_0_chr14_52827741_r.3p | SPECIES: mm9 |
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(1) OTHER.mut |
(2) PIWI.ip |
(1) PIWI.mut |
(1) TDRD1.ip |
(12) TESTES |
| GATAAATACTTTGTCAATTTCTAATTATTTGTTGTTCCCTAGGAGAGGTTCCAAACATAAGTACAGGTTTGAAGCTTGCCCACCCCCCCATTCTTTAAAGAATGAAACTAAAGAGTATTCTTTGTTGGATCGTATGCTTGGCCAGATCTCCTAGTGATAGAACATATATTATCTTTTTCTTTGTTTCTGGATACTTCTAGGATTGACTTTGATAAGGATTGTGAAGATCCTGAATATAAACCCCTCCAGG ...............................................................................................................(((((((((....((((.(((......))))))).....(((....)))............................))))))).)).................................................... ..............................................................................................................111......................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR037902(GSM510438) testes_rep3. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................TATTCTTTGTTGGATCGTATGCTTGGCCAGATCTCCTAGTGATAGAACATAT................................................................................... | 52 | 1 | 62.00 | 62.00 | 62.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TTGACTTTGATAAGGATTGTGAAGATC..................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................................................................................................................................TTTCTGGATACTTCTAG.................................................. | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .............................................................................................................................................................................................................................TGAAGATCCTGAATAgga........... | 18 | gga | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| GATAAATACTTTGTCAATTTCTAATTATTTGTTGTTCCCTAGGAGAGGTTCCAAACATAAGTACAGGTTTGAAGCTTGCCCACCCCCCCATTCTTTAAAGAATGAAACTAAAGAGTATTCTTTGTTGGATCGTATGCTTGGCCAGATCTCCTAGTGATAGAACATATATTATCTTTTTCTTTGTTTCTGGATACTTCTAGGATTGACTTTGATAAGGATTGTGAAGATCCTGAATATAAACCCCTCCAGG ...............................................................................................................(((((((((....((((.(((......))))))).....(((....)))............................))))))).)).................................................... ..............................................................................................................111......................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR037902(GSM510438) testes_rep3. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
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| ..........................................................................................................................................TGGCCAGATCTCCTAGTGATAGAACA...................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - |
| .......................................................................................................................................GCTTGGCCAGATCTCCTAGTGATA........................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................................................................................................................................................................................GATAAGGATTGTGAAGATCCTGAATATA............ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TGCTTGGCCAGATCTCCTAGTGATA........................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .............................................................................CACCCCCCCATTCTTTAAAGAAtga.................................................................................................................................................... | 25 | tga | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................GCTTGGCCAGATCTCCTAGTGATAGA......................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .................................................................................................................................................................................................................AAGGATTGTGAAGAtcat....................... | 18 | tcat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ......................................................................................................................................TGCTTGGCCAGATCTCCTAGTGATAGAACA...................................................................................... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................CTAAAGAGTATTCTTTGTTGGATCGTA.................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - |