| Gene: Chd8 | ID: uc007tot.1_intron_23_0_chr14_52837992_r.5p | SPECIES: mm9 |
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(3) OTHER.mut |
(1) PIWI.ip |
(9) TESTES |
| TGAAGAACCGTAATTGCAAGCTACTTGATAGTCTCAAGCACATGGACCTGGTGAGTTTCCTAAGATGACTTGTAGACACTCTGAAATTGAATCTGATTTCCCTGTGAAATGAAAATTGCTCTAACTTAGCAGAGAACAATGGAACCTATATTAAGGGCCCTGGAGATCGTGTAAACGTCTTAAGTTTTCGGTTTGGAAATGAATTATGAATGGGTGCTTCTTAGTCACAAGGAGCAATGGAAATATGCCT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT2() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................CCTAAGATGACTTGTAGACACTCTGAAATTGAATCTGATTTCCCTGTGAAAT............................................................................................................................................ | 52 | 1 | 101.00 | 101.00 | 101.00 | - | - | - | - | - | - | - | - |
| ........................TTGATAGTCTCAAGCACATGGACCTGGag..................................................................................................................................................................................................... | 29 | ag | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - |
| .........................TGATAGTCTCAAGCACATGGACCTGGT...................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - |
| ..........................GATAGTCTCAAGCACATGGACCT......................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - |
| TGAAGAACCGTAATTGCAAGCTACTTGATAGTCTCAAGCACATGGACCTGGTGAGTTTCCTAAGATGACTTGTAGACACTCTGAAATTGAATCTGATTTCCCTGTGAAATGAAAATTGCTCTAACTTAGCAGAGAACAATGGAACCTATATTAAGGGCCCTGGAGATCGTGTAAACGTCTTAAGTTTTCGGTTTGGAAATGAATTATGAATGGGTGCTTCTTAGTCACAAGGAGCAATGGAAATATGCCT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT2() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................GGACCTGGTGAGTTTCC.............................................................................................................................................................................................. | 17 | 1 | 5.00 | 5.00 | - | 2.00 | 2.00 | - | - | - | - | - | 1.00 |
| .......................................TGGACCTGGTGAGTTTgac................................................................................................................................................................................................ | 19 | gac | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - |
| ........................................TGGACCTGGTGAGTTTCCga.............................................................................................................................................................................................. | 20 | ga | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - |
| ......................................TGGACCTGGTGAGTTgaca................................................................................................................................................................................................. | 19 | gaca | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - |
| .........................................TGGACCTGGTGAGTTTCg............................................................................................................................................................................................... | 18 | g | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - |
| ............................................GACCTGGTGAGTTTCC.............................................................................................................................................................................................. | 16 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - |