| Gene: Hnrnpc | ID: uc007tob.1_intron_6_0_chr14_52704067_r.5p | SPECIES: mm9 |
|
|
|
(2) OTHER.mut |
(6) PIWI.ip |
(1) PIWI.mut |
(22) TESTES |
| ATTTTTATTTTTGTTTTTTTACAGTGAGATTTTTTTGATCTTCAGCTACAGTAAGTTATTACAATTTTTTTTTTACATTTTTCCTGACTTTCGCTGGTTTCCTTTTTATTGTTGTTACTTACTAGTTATTATTATTACTATACTTATAATGGTGATGATGATGATGATAATGATGATTTTTAAACGGATTAAAGTGGAGTTTTTCTGAATGTTAAGATTTCTTCAGCCTCCTGATTGACTTTGGAGTTTT ........................................................................................(((((((....(((.(((....((..(((.(((...(((((((((((((((((.......)))))))))))))))))..))))))..))....))).)))....)))))))................................................... ....................................................................69.................................................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................GATGATAATGATGATTTTTAAACGGATTAAAGTGGAGTTTTTCTGAATGTTA.................................... | 52 | 1 | 32.00 | 32.00 | 32.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................ATGATGATAATGATGATTTTTAAACGGATTAAAGTGGAGTTTTTCTGAATGT...................................... | 52 | 1 | 10.00 | 10.00 | 10.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................GATAATGATGATTTTTAAACGGATTAAAGTG...................................................... | 31 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................GATGATAATGATGATTTTTAAACGGATTA........................................................... | 29 | 2 | 2.50 | 2.50 | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - |
| .............................................................................................................................................................................TGATTTTTAAACGGATTAAAGTGGAG................................................... | 26 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................TACATTTTTCCTGACTTTCGCTGGTTTCC.................................................................................................................................................... | 29 | 2 | 1.50 | 1.50 | - | - | - | - | 1.00 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................GATGATAATGATGATTTTTAAACGGATTAA.......................................................... | 30 | 2 | 1.50 | 1.50 | - | - | - | - | 0.50 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................GATGATGATAATGATGATTTTTAAACGGA.............................................................. | 29 | 2 | 1.50 | 1.50 | - | - | - | 0.50 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................TTTTTCTGAATGTTAAGATact............................. | 22 | act | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................AAAGTGGAGTTTTTCTGAATGTTAAGA................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................TAATGATGATTTTTAAACGGATTAAAGTGGA.................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .............................................................................................................................................................................TGATTTTTAAACGGATTAAAGTGGAGTT................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TACTTATAATGGTGATGATGATGAag.................................................................................... | 26 | ag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................GATAATGATGATTTTTAAACGGATTAAAGT....................................................... | 30 | 2 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................GATAATGATGATTTTTAAACGGATTAAAGcgt..................................................... | 32 | cgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ............................................................................................................................................................................ATGATTTTTAAACGGATTAAAGTG...................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TAATGGTGATGATGATGATGActta............................................................................... | 25 | ctta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................GATGATGATGATAATGATGATTTTTAAAt................................................................. | 29 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................TGATTTTTAAACGGATTAAAGTGGA.................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................GATGATAATGATGATTTTTAAACGtctt............................................................ | 28 | tctt | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TACTTATAATGGTGATGATGATGATG.................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................ATACTTATAATGGTGATGATGATGATG.................................................................................... | 27 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................GATGATGATAATGATGATTTTTAAACGGAT............................................................. | 30 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................ATGATGATAATGATGATTTTTAAACGGA.............................................................. | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................TGTTGTTACTTACTAGTTATTATTATTA................................................................................................................. | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................GATGATAATGATGATTTTTAAACGGA.............................................................. | 26 | 2 | 0.50 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................ATGATGATAATGATGATTTTTAAACGGAT............................................................. | 29 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................TTTTTGATCTTCAGCTACAGTAAGTT................................................................................................................................................................................................. | 26 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - |
| .......................................................................................................................................................................TAATGATGATTTTTAAACGGATTAAAGT....................................................... | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| ................................................................................................................................................................ATGATGATAATGATGATTTTTAAACGGATT............................................................ | 30 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................GATGATAATGATGATTTTTAAACGGATTAAA......................................................... | 31 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TGGTGATGATGATGATGATAATGATG........................................................................... | 26 | 13 | 0.08 | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.08 |
| ATTTTTATTTTTGTTTTTTTACAGTGAGATTTTTTTGATCTTCAGCTACAGTAAGTTATTACAATTTTTTTTTTACATTTTTCCTGACTTTCGCTGGTTTCCTTTTTATTGTTGTTACTTACTAGTTATTATTATTACTATACTTATAATGGTGATGATGATGATGATAATGATGATTTTTAAACGGATTAAAGTGGAGTTTTTCTGAATGTTAAGATTTCTTCAGCCTCCTGATTGACTTTGGAGTTTT ........................................................................................(((((((....(((.(((....((..(((.(((...(((((((((((((((((.......)))))))))))))))))..))))))..))....))).)))....)))))))................................................... ....................................................................69.................................................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................................GGAGTTTTTCTGAATtatc........................................ | 19 | tatc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...................TACAGTGAGATTTTTTT...................................................................................................................................................................................................................... | 17 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - |