| Gene: AK027928 | ID: uc007tbg.1_intron_0_0_chr14_35404517_r | SPECIES: mm9 |
|
|
|
(3) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(20) TESTES |
| TAGGGTGGTGTGTCTGTGAGGTGAACTTCCAGAGGAAGCTGGTGCTACAGGTCGGGAAAAAGGGGAATGGGTTAGGGTTAGGGCAGCAGAGATGAAGGGGATGCCAGGCCTCACACAGGGGATTTCAGAGGAAAGATGAACTGGGGTGGAGGGCGGCATACAGAGTCTGAACGTCAAGAGTCCAAGAGTCTGAGGATATCCCAAGGATTATACTGAAAACAGCCTAAGACTACTGGCTCCTTTGGGGTATGGTCCTTGAGAAGCACCACCCTCTCTGGGGTGTGGTCCTCCAGAAGATCCACCCCTTTGGGGGTGTGGTCCTTGAGAAGGTCCACCCCCAACCTTGACCACAACCCCTCCCTTCCCACAGTTCCTTTCGCTTGTCAATGTTCTCAAATAGGAAAAGGTTTTAGGAGGCCCTGTGAGACACTCCTAGAGACGGACAGATCTGTATTATTTATTTTCAGACCAAGGGACACCTCCCCAGTCTGGATCTCGGGATGTAGGATGCCCACTG ..........................................................................................................................................................................................................................................................................................................................................................................................((..(((..(((((((...(((((....((((((((....)))..)))))..)))))..)).))))))))..))................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................368................................................................................................467................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACACTCCTAGAGACGGACAGATCT................................................................... | 28 | 1 | 10.00 | 10.00 | 5.00 | 4.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACACTCCTAGAGACGGACAGATC.................................................................... | 27 | 1 | 4.00 | 4.00 | 1.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGACACTCCTAGAGACGGACAG....................................................................... | 26 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGACGGACAGATCTGTATTATTT.......................................................... | 26 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGATCTCGGGATGTAGGATGCC..... | 26 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACACTCCTAGAGACGGACAGAT..................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCTCGGGATGTAGGATGCCCACT. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................TCTCAAATAGGAAAAGGTTTTAGGAGG.................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGAGACACTCCTAGAGACGG........................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................TACAGAGTCTGAACGTCAAGAGTCCAAGA.......................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGACACTCCTAGAGACGGACA........................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGACGGACAGATCTGTATTATTTA......................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACACTCCTAGAGACGGACAGATCTG.................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACACTCCTAGAGACGGACAGATCTGT................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACACTCCTAGAGACGGACAGA...................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGACACTCCTAGAGACGGACAGATC.................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................TGAGGATATCCCAAGGATTATACTGAAg........................................................................................................................................................................................................................................................................................................... | 28 | g | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGACAGATCTGTATTATTTATTTT..................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................TAGGGTTAGGGCAGCAGAGATGAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACACTCCTAGAGACGGACAGATCTGTA................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................TACTGAAAACAGCCTAAGACTACTGGC........................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................GATTTCAGAGGAAAGATGAACTGGGG................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGCCCTGTGAGACACTC..................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGATCTGTATTATTT.......................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............TGTGAGGTGAACTTCCAGAGGAAGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTAGAGACGGACAGATCTGTATTA............................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGACGGACAGATCTG.................................................................. | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - |
| ....................GTGAACTTCCAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 15 | 13 | 0.08 | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.08 | - |
| ....................GTGAACTTCCAGAGGccc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | ccc | 0.08 | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.08 |
| TAGGGTGGTGTGTCTGTGAGGTGAACTTCCAGAGGAAGCTGGTGCTACAGGTCGGGAAAAAGGGGAATGGGTTAGGGTTAGGGCAGCAGAGATGAAGGGGATGCCAGGCCTCACACAGGGGATTTCAGAGGAAAGATGAACTGGGGTGGAGGGCGGCATACAGAGTCTGAACGTCAAGAGTCCAAGAGTCTGAGGATATCCCAAGGATTATACTGAAAACAGCCTAAGACTACTGGCTCCTTTGGGGTATGGTCCTTGAGAAGCACCACCCTCTCTGGGGTGTGGTCCTCCAGAAGATCCACCCCTTTGGGGGTGTGGTCCTTGAGAAGGTCCACCCCCAACCTTGACCACAACCCCTCCCTTCCCACAGTTCCTTTCGCTTGTCAATGTTCTCAAATAGGAAAAGGTTTTAGGAGGCCCTGTGAGACACTCCTAGAGACGGACAGATCTGTATTATTTATTTTCAGACCAAGGGACACCTCCCCAGTCTGGATCTCGGGATGTAGGATGCCCACTG ..........................................................................................................................................................................................................................................................................................................................................................................................((..(((..(((((((...(((((....((((((((....)))..)))))..)))))..)).))))))))..))................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................368................................................................................................467................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................TGCCAGGCCTCACACAGGGGATTTCA...................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 10.00 | 10.00 | 4.00 | 4.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................GATGCCAGGCCTCACACAGGGGATTTCA...................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 8.00 | 8.00 | 1.00 | 1.00 | - | - | - | 4.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................CCTTTCGCTTGTCAATGTTCTCAAATA...................................................................................................................... | 27 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................AGGGCGGCATACAGAGTCTGAACGTCA..................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGATCTGTATTATTTATTTTCA................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................AGGGGATGCCAGGCCTCACACAGGGGA........................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................GGCATACAGAGTCTGAACGTCAAGAGTC............................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................TCCTTTCGCTTGTCAATGTTCTCAAA........................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ............................................................................................................................................................................................TCTGAGGATATCCCAAGG....................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................GGGCGGCATACAGAGTCTGAACGTCA..................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................TCCAAGAGTCTGAGGATATCCC........................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................GCATACAGAGTCTGAACGTCAAGAGTC............................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................CTTTCGCTTGTCAATGTTCTCAAATA...................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................AGAGTCCAAGAGTCTGAGGATATCCCA.......................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................TCCCACAGTTCCTTTCGCTTGTCA................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................GACCACAACCCCggc................................................................................................................................................................ | 15 | ggc | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................CCTAAGACTACTGGCTCCT.................................................................................................................................................................................................................................................................................... | 19 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |