| Gene: Nisch | ID: uc007swy.1_intron_6_0_chr14_31990899_r.3p | SPECIES: mm9 |
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(3) OTHER.mut |
(4) PIWI.ip |
(17) TESTES |
| GCCAGCGTGGTTTGGGCAGGGTGTGCTTCGCAGTATGTGGACGTGTGGACTCATCCTGATGGCAGCCACTTGACAGGCTCAGCTGTATGAGAGGCTCAGGAGACACAAGGATCGCCTCCCTAGGGTTAGGGGACTACATACGACAGCAGACTAGGGGATAGAATGTCCCTGTGTCTCTGACCCAGTCTCTTCTTGCACAGCCCAGATCATGCAGAGCCAGAGGTTCAGGTGGTGCCTGGGTCCGGCCAGA ....................................................................(((((....((((......))))....))))).......(((....)))((((((.(((((....))).........))...)))))).............................................................................................. .................................................................66.........................................................................................157........................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
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| ......................................................................TGACAGGCTCAGCTGTATGAGAGGCTC......................................................................................................................................................... | 27 | 1 | 16.00 | 16.00 | 6.00 | 6.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TAGGGGACTACATACGACAGCAGACTA................................................................................................. | 27 | 1 | 15.00 | 15.00 | 5.00 | 8.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TACATACGACAGCAGACTAGGGGATAG......................................................................................... | 27 | 1 | 7.00 | 7.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 |
| .......................................................................................................................CTAGGGTTAGGGGACTACATACGACAGCAGAC................................................................................................... | 32 | 1 | 6.00 | 6.00 | - | - | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TAGGGGACTACATACGACAGCAGACT.................................................................................................. | 26 | 1 | 5.00 | 5.00 | 2.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TACATACGACAGCAGACTAGGGGATA.......................................................................................... | 26 | 1 | 5.00 | 5.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................CCAGATCATGCAGAGCCAGAGGTTCA....................... | 26 | 1 | 5.00 | 5.00 | - | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TACGACAGCAGACTAGGGGATAGAATGT.................................................................................... | 28 | 1 | 4.00 | 4.00 | 1.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TACGACAGCAGACTAGGGGATAGAATG..................................................................................... | 27 | 1 | 4.00 | 4.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TGTGGACGTGTGGACTCATCCTGATGGC........................................................................................................................................................................................... | 28 | 1 | 3.00 | 3.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................GACGTGTGGACTCATCCTGATGGCAGC........................................................................................................................................................................................ | 27 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TGTGGACGTGTGGACTCATCCTGATG............................................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................TGGACGTGTGGACTCATCCTGATGGCA.......................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGAGAGGCTCAGGAGACACAAGGATCGC....................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................CATACGACAGCAGACTAGGGGATAGA........................................................................................ | 26 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................TATGAGAGGCTCAGGAGACACAAGGA........................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TAGGGGACTACATACGACAGCAGACTAG................................................................................................ | 28 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................AGGGGACTACATACGACAGCAGACTA................................................................................................. | 26 | 1 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TTAGGGGACTACATACGACAGCAGACT.................................................................................................. | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................TGACAGGCTCAGCTGTATGAGAGGCT.......................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................GATCATGCAGAGCCAGAGGTTCAGGcg................... | 27 | cg | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................GAGGCTCAGGAGACACAAGGATCGCC...................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................TAGGGTTAGGGGACTACATACGACAGC....................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TTGCACAGCCCAGATCATGCAGAGCCAG.............................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............................CGCAGTATGTGGACGTGTGGACTCA..................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................TGTATGAGAGGCTCAGGAGACACAAGG............................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................TGGACGTGTGGACTCATCCTGATGGC........................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TAGGGGACTACATACGACAGCAGAC................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................GGGTTAGGGGACTACATACGACAGC....................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .................................................................................................................................GGGACTACATACGACAGCAGACTAGGGG............................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................GGGTTAGGGGACTACATACGACAGCAG..................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TCGCAGTATGTGGACGTGTGGACTC...................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................GCTCAGCTGTATGAGAGGCTa......................................................................................................................................................... | 21 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................................................................................TATGAGAGGCTCAGGAGACACAAGGATCG........................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................CCCAGATCATGCAGAGCCAGAGGatc........................ | 26 | atc | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................................GACACAAGGATCGCCTCCCTAGGGTga.......................................................................................................................... | 27 | ga | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................................................TGTATGAGAGGCTCAGGAGACACAAGGAT.......................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................GGGTGTGCTTCGCAGTATGTGGACGTGTGGAC........................................................................................................................................................................................................ | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..............................................................................TCAGCTGTATGAGAGGCTCAGGAGAC.................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................GTATGAGAGGCTattt...................................................................................................................................................... | 16 | attt | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................ACGACAGCAGACTAGGGGATAGAATG..................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................GCTGTATGAGAGGCgatg....................................................................................................................................................... | 18 | gatg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................TGTGGACGTGTGGACTCATCCTGATGGCA.......................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................GCTGTATGAGAGGCTCAGGAGACACA............................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGAGAGGCTCAGGAGACACAAGGAT.......................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TACGACAGCAGACTAGGGGATAGAATGTC................................................................................... | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TGGACTCATCCTGATGGCAGCCACTTG.................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TACGACAGCAGACTAGGGGATAGAgtgt.................................................................................... | 28 | gtgt | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................GTGCTTCGCAGTATGTGGACGTGTGG.......................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................................................................................................GGGTTAGGGGACTACATACGACAGCA...................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................GACGTGTGGACTCATCCTGATGGCAGCC....................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................CACAAGGATCGCCTCCCTAGGGTTAGGGGt..................................................................................................................... | 30 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................TGAGAGGCTCAGGAGACACAAGGATCG........................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................CTACATACGACAGCAGACTAGGGGAT........................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TGTGGACGTGTGGACTCATCCTGATGGCAt......................................................................................................................................................................................... | 30 | t | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| GCCAGCGTGGTTTGGGCAGGGTGTGCTTCGCAGTATGTGGACGTGTGGACTCATCCTGATGGCAGCCACTTGACAGGCTCAGCTGTATGAGAGGCTCAGGAGACACAAGGATCGCCTCCCTAGGGTTAGGGGACTACATACGACAGCAGACTAGGGGATAGAATGTCCCTGTGTCTCTGACCCAGTCTCTTCTTGCACAGCCCAGATCATGCAGAGCCAGAGGTTCAGGTGGTGCCTGGGTCCGGCCAGA ....................................................................(((((....((((......))))....))))).......(((....)))((((((.(((((....))).........))...)))))).............................................................................................. .................................................................66.........................................................................................157........................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
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