| Gene: Rft1 | ID: uc007svn.1_intron_10_0_chr14_31496043_f.3p | SPECIES: mm9 |
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(2) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(18) TESTES |
| TATGTACTAGACAAGCACTGGGTTTAATCTAGCACAAGAACCATAATAAACCAGCCTTGCTCACAACACACCTAAAAAGTAAGACCACTGGATTATGGGAACTCATCCGGGGCAATGTGAACTCAGGGATCTTTCTGTGAGTTGCTATGGCTGCTTTTTGGGAGTCAGATGCTCACCTCCCCACTCTGCTTGTCTCCCAGGTACAATTTCACCATGCTGGCACTGTCATCCTCGTTTTTAGTCTTATCCT .................................................................................................(((.....)))..(((...((.((((((.(((....))).))))))))....))).................................................................................................. ..........................................................................................91....................................................................161....................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475281(GSM475281) total RNA. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTGAAC................................................................................................................................ | 27 | 1 | 50.00 | 50.00 | 26.00 | 15.00 | - | 3.00 | - | 3.00 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................TAGCACAAGAACCATAATAAACCAGCCT................................................................................................................................................................................................. | 28 | 1 | 16.00 | 16.00 | 8.00 | 3.00 | 1.00 | 1.00 | - | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................TGGATTATGGGAACTCATCCGGGGC......................................................................................................................................... | 25 | 1 | 9.00 | 9.00 | 2.00 | 1.00 | 1.00 | - | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | 1.00 | - | - |
| ........................................................................TAAAAAGTAAGACCACTGGATTATGGGA...................................................................................................................................................... | 28 | 1 | 9.00 | 9.00 | 3.00 | 1.00 | 2.00 | - | - | - | - | - | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - |
| .............................TAGCACAAGAACCATAATAAACCAGCCTT................................................................................................................................................................................................ | 29 | 1 | 7.00 | 7.00 | 1.00 | 5.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTGAA................................................................................................................................. | 26 | 1 | 5.00 | 5.00 | 4.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TAAGACCACTGGATTATGGGAACTCATC............................................................................................................................................... | 28 | 1 | 4.00 | 4.00 | - | - | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................TAGCACAAGAACCATAATAAACCAGCC.................................................................................................................................................................................................. | 27 | 1 | 4.00 | 4.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TAGACAAGCACTGGGTTTAATCTAGCAC....................................................................................................................................................................................................................... | 28 | 1 | 3.00 | 3.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGTACTAGACAAGCACTGGGTTTAATCT............................................................................................................................................................................................................................ | 28 | 1 | 3.00 | 3.00 | - | 1.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................TAAAAAGTAAGACCACTGGATTATGGG....................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....TACTAGACAAGCACTGGGTTTAATCTA........................................................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...............................................................................TAAGACCACTGGATTATGGGAACTCATCC.............................................................................................................................................. | 29 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTGAACTC.............................................................................................................................. | 29 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTGAt................................................................................................................................. | 26 | t | 2.00 | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTGAACT............................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ........................................................................................TGGATTATGGGAACTCATCCGGGGCA........................................................................................................................................ | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TGTGAACTCAGGGATCTTTCTGTG............................................................................................................... | 24 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TAATCTAGCACAAGAACCATAATAAACC...................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTtaac................................................................................................................................ | 27 | taac | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTGAACTggga........................................................................................................................... | 32 | ggga | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TCTAGCACAAGAACCATAATAAACCAGC................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................CGGGGCAATGTGAACT............................................................................................................................... | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ........................TAATCTAGCACAAGAACCATAATAAACCAG.................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TGTGAACTCAGGGATCTTTCTGTGA.............................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................GACCACTGGATTATGGGAACTCATC............................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................TGGATTATGGGAACTCATCCGGGGCAA....................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTGA.................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................CTGGATTATGGGAACTCATCCGGGGC......................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TCTAGCACAAGAACCATAATAAACCAGCC.................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................TTTCTGTGAGTTGCTATGGCTGCTTT............................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................TGTGAGTTGCTATGGCTGCTTTTTGG......................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................TAGCACAAGAACCATAATAAACCAGC................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....TACTAGACAAGCACTGGGTTTAATCT............................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TAAGACCACTGGATTATGGGAACTCAT................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTG................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTGAAat............................................................................................................................... | 28 | at | 1.00 | 5.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................GATTATGGGAACTCATCCGGGGCAAT...................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGGGAACTCATCCGGGGCAATGTGAACaa.............................................................................................................................. | 29 | aa | 1.00 | 50.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................GGATTATGGGAACTCATCCGGGGC......................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................AAGTAAGACCACTGGATTATGGGAACTCATC............................................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TGTGAACTCAGGGATCTTTCTGTGt.............................................................................................................. | 25 | t | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................................................................................TGAACTCAGGGATCTTTCTGTGAGTTGC......................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................TAATAAACCAGCCTTGCTCACAACACAC................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| TATGTACTAGACAAGCACTGGGTTTAATCTAGCACAAGAACCATAATAAACCAGCCTTGCTCACAACACACCTAAAAAGTAAGACCACTGGATTATGGGAACTCATCCGGGGCAATGTGAACTCAGGGATCTTTCTGTGAGTTGCTATGGCTGCTTTTTGGGAGTCAGATGCTCACCTCCCCACTCTGCTTGTCTCCCAGGTACAATTTCACCATGCTGGCACTGTCATCCTCGTTTTTAGTCTTATCCT .................................................................................................(((.....)))..(((...((.((((((.(((....))).))))))))....))).................................................................................................. ..........................................................................................91....................................................................161....................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475281(GSM475281) total RNA. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................................TACAATTTCACCATgagc................................... | 18 | gagc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................GAACCATAATAAACctgt....................................................................................................................................................................................................... | 18 | ctgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |