| Gene: Cacna1d | ID: uc007sut.1_intron_4_0_chr14_30862307_r.3p | SPECIES: mm9 |
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(6) OTHER.mut |
(1) OVARY |
(3) PIWI.ip |
(16) TESTES |
| CCACAAGTACACACACACACACACACAGAGGCACAGGCACAGGGCACTTTGGCCAGGGCCTGAGTAGTCTTATGGCCCCGGGGCAGGGATGCGTAGGAAGATGGAGGCACTCTGAGGGAGGACACAGGCTGTTGCAGAGGCATGGCTGAAGGATCTAGCTGCCACCTCCTCAAGCTCTCAGATCTCTTTCCCAACTGCAGGTCTGAGTCAGGAGATGAGCAATTTCCAACCATTTGCCGTGAAGATCCTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................TAGGAAGATGGAGGCACTCTGAGGGA................................................................................................................................... | 26 | 1 | 7.00 | 7.00 | 5.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................................TGGAGGCACTCTGAGGGAGGACA.............................................................................................................................. | 23 | 1 | 6.00 | 6.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................TAGGAAGATGGAGGCACTCTGAGG..................................................................................................................................... | 24 | 1 | 6.00 | 6.00 | - | 1.00 | 3.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................TCCCAACTGCAGGTCTGAGTCAGGAGA................................... | 27 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................TGCGTAGGAAGATGGAGGCACTCTG........................................................................................................................................ | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TGAGTCAGGAGATGAGCAATTTCCAACC................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ................................................................................................................................................................................................AACTGCAGGTCTGAGTCAGGAGATGt................................ | 26 | t | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................CAGATCTCTTTCCCAAatgt.................................................... | 20 | atgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................CACACAGAGGCACAGGCACAGGGCA............................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...................................................................................................................................TTGCAGAGGCATGGCTGAAGGATgc.............................................................................................. | 25 | gc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ......................................................................TATGGCCCCGGGGCAGGGATGCGTA........................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................TCCCAACTGCAGGTCTGAGTCAGGAGAT.................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................ATGCGTAGGAAGATGGAGGCACTCTG........................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................TAGGAAGATGGAGGCACTCTGA....................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................ACTGCAGGTCTGAGTCAGGAGATGAGC.............................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ....................................................................................................................................TGCAGAGGCATGGCTGAAGGATCTAGC........................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................TCCCAACTGCAGGTCTGAGTCAGGAG.................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................CACAGAGGCACAGGCACAGGGCACT.......................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................GGGCACTTTGGCCAaggt............................................................................................................................................................................................... | 18 | aggt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................TAGGAAGATGGAGGCACTCTGAGGG.................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................TGCGTAGGAAGATGGAGGCACTCTGA....................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................TGCAGGTCTGAGTCAGGAGATGAGCAAT........................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................AGGAAGATGGAGGCACTCTGAGGGA................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................GGCACTCTGAGGGAGGACACAGGCT........................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CCACAAGTACACACACACACACACACAGAGGCACAGGCACAGGGCACTTTGGCCAGGGCCTGAGTAGTCTTATGGCCCCGGGGCAGGGATGCGTAGGAAGATGGAGGCACTCTGAGGGAGGACACAGGCTGTTGCAGAGGCATGGCTGAAGGATCTAGCTGCCACCTCCTCAAGCTCTCAGATCTCTTTCCCAACTGCAGGTCTGAGTCAGGAGATGAGCAATTTCCAACCATTTGCCGTGAAGATCCTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....AGTACACACACACACACACACAGA............................................................................................................................................................................................................................. | 24 | 13 | 0.08 | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.08 |