(7)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(2)
PIWI.mut
(24)
TESTES

Sense strand
GCAGCCACGGTGTCGGAGGCGAGGCGAGGAAGGGAGCTGGAATAACAAAGGCAAGTTGGGAAGAGCGCAAGGGGGCGCAGCCCTGGCCGGGCCGCGGGGGGAGCCCTGCACTGCCGGGTCGTCGGAGGCTGCTTGGCCGCCAGCCGGGGGAACCGGAGGTGGGGAGGAAAAGTGGGGGGAGAGGGGCGGAGCCGCCGCGTGACGTCAGAGAACAATGACACCGCTGGGGGCGGGTTTGGGCAGGCAGCCCGGGCGGGGGTCTTTCTCAGGGCCTGGGGCGGGCGGATGAAGTCTTGGCCTCGCCAAGGCGGCAGTTTGATTGACGAGGTCCGCAGGGGAGCGCAGACGTGCCACGCAGACTCGTGAGTCCTGAGCCTCCTGGGTGGTGATCAGAGCGCACCGCAGGCCGACAGGGGAGCCGGCCGGACAGCTCCCCCCATCACAGACCCCCAGTTTAGAATATCCTTCAGAGGGCTGGCTGATCTGACCTCGGCTTGAACTCCTTCAGGGCCAGAGAGATCACTCCTTCCATCACCAAGACAAGAAGGCAAAATGCGT
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((.((((....((((....))))....)))).))).....((((((((....)))))).))..............................................
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................451.............................................................515.........................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATATCCTTCAGAGGGCTGGCTGA............................................................................ 27 1 6.00 6.00 2.00 1.00 - 2.00 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCCTTCAGGGCCAGAGAGATC..................................... 26 1 4.00 4.00 1.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATATCCTTCAGAGGGCTGGCTG............................................................................. 26 1 3.00 3.00 1.00 - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCTCGGCTTGAACTCCTTCAGGGCC.............................................. 28 1 3.00 3.00 - - - 1.00 - - - - - - - - 2.00 - - - - - - - - - - - -
.............................................................................................................................................................................................................CAGAGAACAATGACACCGCTGGGGGCG...................................................................................................................................................................................................................................................................................................................................... 27 1 3.00 3.00 - - - - - - - - 1.00 - 2.00 - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................TGAGTCCTGAGCCTCCTGGGTGGTGAT........................................................................................................................................................................ 27 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................TGAGTCCTGAGCCTCCTGGGTGGTGA......................................................................................................................................................................... 26 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATATCCTTCAGAGGGCTGGCTGt............................................................................ 27 t 2.00 3.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................AGAGAACAATGACACCGCTGGGGGCG...................................................................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCTCGGCTTGAACTCCTTCAGGGC............................................... 27 1 2.00 2.00 - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATATCCTTCAGAGGGCTGGCTGAT........................................................................... 28 1 2.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - 1.00 - -
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTTCAGAGGGCTGGC............................................................................... 19 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................TGAGTCCTGAGCCTCCTGGGTGGTGATC....................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCCTTCAGAGGGCTGGCTGA............................................................................ 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCCTTCAGGGCCAGAGAGATCACT.................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAATATCCTTCAGAGGGCTGGCT.............................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGCGCACCGCAGGCCGACAGGGGcaa........................................................................................................................................... 30 caa 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAATATCCTTCAGAGGGCTGGCTGA............................................................................ 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................CGCGGGGGGAGCagc................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 15 agc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCCTTCAGGGCCAGAGAGAT...................................... 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................TTTGATTGACGAGGTCCGCAGGGGA........................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................CGGGCCGCGGGGGGAGCCCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 22 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAATATCCTTCAGAGGGCTGGCTG............................................................................. 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTTCAGAGGGCTGGCTGATCTGA....................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGCCGGGTCGTCGGAGGCTGCTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..................................................................................................................................................................................................................................................................................GGGGCGGGCGGATGggga.......................................................................................................................................................................................................................................................................... 18 ggga 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGAATATCCTTCAGAGGGCTGG................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.......................................................................................................................................................................................................................................................................................GGGCGGATGAAGTCTTGGC.................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTTCAGAGGGCTGGCTGATCTG........................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGGCCAGAGAGATCACTCCTTa............................. 26 a 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATATCCTTCAGAGGGCTGGCT.............................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGCGCACCGCAGGCCGACAGG................................................................................................................................................ 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATATCCTTCAGAGGGCTGGCTca............................................................................ 27 ca 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................TGCCACGCAGACTCGTGAGTCCTGAGC....................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGGCTGGCTGATCTGACCTCGGCa............................................................... 28 a 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................TGATTGACGAGGTCCGCAGGGGAGC......................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................AGAGAACAATGACACCGCTGGGGGCGGGTgtg................................................................................................................................................................................................................................................................................................................................ 32 gtg 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TCAGAGAACAATGACACCGCTGGGGGC....................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACCTCGGCTTGAACTttca..................................................... 23 ttca 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..............................AGGGAGCTGGAATAgagt.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 18 gagt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGGGCTGGCTGAgg.......................................................................... 18 gg 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACCTCGGCTTGAACTCCTTCAGGGCC.............................................. 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGAATATCCTTCAGAGGGCTGGC............................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................CAGAGAACAATGACACCGCTGGGGGC....................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................AGGAAGGGAGCTGGAATAACAAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................GCTGGAATAACAAAGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................AGGAAAAGTGGGGGGA.......................................................................................................................................................................................................................................................................................................................................................................................... 16 7 0.14 0.14 - - - - - - - - - - - - - 0.14 - - - - - - - - - - -

Antisense strand
GCAGCCACGGTGTCGGAGGCGAGGCGAGGAAGGGAGCTGGAATAACAAAGGCAAGTTGGGAAGAGCGCAAGGGGGCGCAGCCCTGGCCGGGCCGCGGGGGGAGCCCTGCACTGCCGGGTCGTCGGAGGCTGCTTGGCCGCCAGCCGGGGGAACCGGAGGTGGGGAGGAAAAGTGGGGGGAGAGGGGCGGAGCCGCCGCGTGACGTCAGAGAACAATGACACCGCTGGGGGCGGGTTTGGGCAGGCAGCCCGGGCGGGGGTCTTTCTCAGGGCCTGGGGCGGGCGGATGAAGTCTTGGCCTCGCCAAGGCGGCAGTTTGATTGACGAGGTCCGCAGGGGAGCGCAGACGTGCCACGCAGACTCGTGAGTCCTGAGCCTCCTGGGTGGTGATCAGAGCGCACCGCAGGCCGACAGGGGAGCCGGCCGGACAGCTCCCCCCATCACAGACCCCCAGTTTAGAATATCCTTCAGAGGGCTGGCTGATCTGACCTCGGCTTGAACTCCTTCAGGGCCAGAGAGATCACTCCTTCCATCACCAAGACAAGAAGGCAAAATGCGT
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((.((((....((((....))))....)))).))).....((((((((....)))))).))..............................................
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................451.............................................................515.........................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCACAGACCCCCAGTTTAGAATA................................................................................................ 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................................................................................................GGGAGCCCTGCACTGCCGGGTCGTCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................AGCCGCCGCGTGACGTCAGAGAACAA....................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATCACAGACCCCCAGTTTA..................................................................................................... 23 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................AGTCCTGAGCCTCCTGGGTGGTGATCA...................................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................GGAGCCGCCGCGTGACGTCAGAGAACAA....................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................GTCCTGAGCCTCCTGGGTGGTGATCAa...................................................................................................................................................................... 27 a 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................................GCTGGAATAACAAAGGCAAGTTGGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -