| Gene: Ccno | ID: uc007rwz.1_intron_1_0_chr13_113779285_f | SPECIES: mm9 |
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(2) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(3) PIWI.mut |
(15) TESTES |
| ACTGCTTCCAGCTGCTCGGGGTCACCTGTCTGCTCATCGCTTGCAAGCAGGTACCACCAGGCGAAAGAGTGCGATGTGTTTGCAGCCAGCGCCCCCCTTCCCCAACTCGTGCATGGCTTAGGGCTGGGTTGCTTGGCTTATCTGGGCAGATGCTCGAAGATCTTTCCATGTCATAGCCTTAACTTCTCTTACCACTCACAGCAACAATCCTTTCAGACTACAAAGAGGTTAGGCTGTAGCTGGCCGCCCAACCAAAGCTTTGTGGTACTTGTCTCTGGAAAAGATGCTTTTAAAGTCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTAAAGTTGGGTTGTAGATAGAGAAGGTGCACTAGCAGCTGTGGGTGGGGGGAGAGGTTTCAGGAGCGGAATTGTGGAAGTGGAAGGAATATAGAGTTCGAGTCCCAGTTTTCTCCCGGGTTTTAGGCTGGATGGATTTGGGTCCCAGGTACCCACCAGTCCGGAACTGGAGCACACTCTGTGTTGCAGGTAGAGGTGCACCCACCTCGCTTGAAACAGCTCCTGGCCCTGTGCGGCGG .............................................................................................................................................................................................................................................................................................................................................................................................................................................................((((((((....((.((((((.....((((.......(((((.(((((((((...))))))..)))))))))))))))))).))..))))))))........................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................446................................................................................................545................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................................................................................................................................................................................................TAAAGTTGGGTTGTAGATAGAGAAGG.................................................................................................................................................................................................................... | 26 | 1 | 6.00 | 6.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | 1.00 | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGTTGCAGGTAGAGGTGCACCCACC................................. | 29 | 1 | 4.00 | 4.00 | - | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGAAGTGGAAGGAATATAGAGT.............................................................................................................................................. | 26 | 1 | 3.00 | 3.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................TAAAGTTGGGTTGTAGATAGAGAAG..................................................................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....TTCCAGCTGCTCGGGGTCACCTGTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGTTGGGTTGTAGATAGAGA....................................................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCGGAATTGTGGAAGTGGAA.......................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................TGGGTTGTAGATAGAGAAGGTGCAC............................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................................................................................................................................TGGCTTATCTGGGCAGATGCTCGAAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGGGGGGAGAGGgc.................................................................................................................................................................................... | 19 | gc | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................AAGCTTTGTGGTACTTGTCTCTGGA............................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................TTAAAGTTGGGTTGTAGATAGAGAA...................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGTTGGGTTGTAGATAGAGAA...................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................TTTAAAGTTGGGTTGTAGATAGAGA....................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................TGGTACTTGTCTCTGGAAAAGATGCT................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAACAGCTCCTGGCCCTGTGCGGCGGg | 30 | g | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................AAGCTTTGTGGTACTTGTCTCTGGAA........................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCTGTGGGTGGGGGGAGAGG...................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TACAAAGAGGTTAGGCTGTAGCTGGCCGC............................................................................................................................................................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTGCACTAGCAG......................................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGAACTGGAGCACACTCTGTGTTGCAGG................................................. | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAGCTCCTGGCCCTGTGCGGC.. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................CACACACATTTTAAAGTTGGGTTGTAGA............................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCCCGGGTTTTAGGCTGGATGGA....................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TGGCTTATCTGGGCAGga............................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 18 | ga | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGAAGGAATATAGAGTTCGAGTC....................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGAAGGAATATAGAGTTCGAGT........................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TAGGGCTGGGTTGCTTGGCTTATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................CACACACACATTTTAAAGTTGGGTTGTA............................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................TGGGTTGTAGATAGAGAAGGTGCACTAGC........................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTCGAGTCCCAGTTTTCTCCCG......................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................TAAAGTTGGGTTGTAGATAGAGAAGGTG.................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ACTGCTTCCAGCTGCTCGGGGTCACCTGTCTGCTCATCGCTTGCAAGCAGGTACCACCAGGCGAAAGAGTGCGATGTGTTTGCAGCCAGCGCCCCCCTTCCCCAACTCGTGCATGGCTTAGGGCTGGGTTGCTTGGCTTATCTGGGCAGATGCTCGAAGATCTTTCCATGTCATAGCCTTAACTTCTCTTACCACTCACAGCAACAATCCTTTCAGACTACAAAGAGGTTAGGCTGTAGCTGGCCGCCCAACCAAAGCTTTGTGGTACTTGTCTCTGGAAAAGATGCTTTTAAAGTCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTAAAGTTGGGTTGTAGATAGAGAAGGTGCACTAGCAGCTGTGGGTGGGGGGAGAGGTTTCAGGAGCGGAATTGTGGAAGTGGAAGGAATATAGAGTTCGAGTCCCAGTTTTCTCCCGGGTTTTAGGCTGGATGGATTTGGGTCCCAGGTACCCACCAGTCCGGAACTGGAGCACACTCTGTGTTGCAGGTAGAGGTGCACCCACCTCGCTTGAAACAGCTCCTGGCCCTGTGCGGCGG .............................................................................................................................................................................................................................................................................................................................................................................................................................................................((((((((....((.((((((.....((((.......(((((.(((((((((...))))))..)))))))))))))))))).))..))))))))........................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................446................................................................................................545................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
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| ......................................................................................GCGCCCCCCTTCCCCAgg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | gg | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |