chr13:67433203 67433452 -
(6)
OTHER.mut 		(1)
OVARY 		(5)
PIWI.ip 		(2)
PIWI.mut 		(24)
TESTES

Sense strand
AGTTAGGCGTCTGTCCTGTTGAGCACTGCGTTTGGATCTCTGACATGGAGGTTGGTGCAGGGAACAGCGCCATCTTGCAGATCTGAGGGACTGTGCAGGGTGGCTGGTCGGGCGCTGAAGATGATTTGAGCTGACCTGGAGATGCTGTGCTGACCTAGGCTGGGCCACTGCCCCTGGGCACAGGTTTGAAGGGGAGAAGGTTGGAAACAACAGGATGGCAAGGGCAGGCTGGGTCTGCTGACTGCCTCTG


 Size Perfect hit Total Norm Perfect Norm mjTestesWT3()
Testes Data. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesWT4()
Testes Data. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR014234(GSM319958)
Ovary total. (ovary) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
..........................TGCGTTTGGATCTCTGACATGGAGGTT..................................................................................................................................................................................................... 27 1 5.00 5.00 - - - - 2.00 2.00 - - - - - 1.00 - - - - - - - - - - - - -
..........................................................................TTGCAGATCTGAGGGACTGTGCAGGG...................................................................................................................................................... 26 2 4.50 4.50 - - - 4.50 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................GCTGGTCGGGCGCTGAAGATGATTTGAG........................................................................................................................ 28 1 3.00 3.00 - - - - - - 3.00 - - - - - - - - - - - - - - - - - -
..........CTGTCCTGTTGAGCACTGC............................................................................................................................................................................................................................. 19 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - -
...TAGGCGTCTGTCCTGTTGAGCACTGC............................................................................................................................................................................................................................. 26 1 3.00 3.00 - - 1.00 - - - - - - - - - 1.00 1.00 - - - - - - - - - - -
.......................................................................................................................GATGATTTGAGCTGACCTGGAGATGCT........................................................................................................ 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................TCTGAGGGACTGTGCAGGGTGGCTGG............................................................................................................................................... 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................GATGATTTGAGCTGACCTGGAGATGC......................................................................................................... 26 1 2.00 2.00 - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................CAGGGTGGCTGGTCGGGCGCTGAAaag................................................................................................................................ 27 aag 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....AGGCGTCTGTCCTGTTGAG................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................................................................................................................GATGATTTGAGCTGACCTGGAGA............................................................................................................ 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................CACTGCGTTTGGATCTCTGACATGGAGG....................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.................................................................................TCTGAGGGACTGTGCAGGGTGGCTG................................................................................................................................................ 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GGCTGGTCGGGCGCTGAAGATGAT............................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................................TGCAGATCTGAGGGACTGTGCAGG....................................................................................................................................................... 24 2 1.00 1.00 - - - - - - - - - - 0.50 - - - - - - - - - 0.50 - - - -
.........................................................................................................................TGATTTGAGCTGACCTGGAGATGCTGTG..................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TGATTTGAGCTGACCTGGAGATGCTG....................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGAAGATGATTTGAGCTGACCTGGAGA............................................................................................................ 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................................TGAAGATGATTTGAGCTGACCTGGA.............................................................................................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................GGAGGTTGGTGCAGGGttt......................................................................................................................................................................................... 19 ttt 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................TGAGCACTGCGTTTGGATCTCTGACATGt.......................................................................................................................................................................................................... 29 t 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...................TGAGCACTGCGTTTGGATCTCTGACA............................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TTTGAGCTGACCTGGAGATGCTGTGC.................................................................................................... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
........................ACTGCGTTTGGATCTCTGACATGGAGGa...................................................................................................................................................................................................... 28 a 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................TGAGGGACTGTGCAGGGTGGCTGGT.............................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
....................................................................................................................................................................................CAGGTTTGAAGGGGAGAAGGTTGGA............................................. 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................AGGCTGGGTCTGCTGACTG...... 19 6 0.83 0.83 - - - - - - - - - 0.83 - - - - - - - - - - - - - - -
......................................TCTGACATGGAGGTTGGTG................................................................................................................................................................................................. 19 6 0.83 0.83 - - - 0.67 - - - - - - - - - - 0.17 - - - - - - - - - -
......................................TCTGACATGGAGGTTGGTGCAGGG............................................................................................................................................................................................ 24 6 0.83 0.83 0.67 - - - - - - - - - - - - - 0.17 - - - - - - - - - -
..........................................................................................................................................GAGATGCTGTGCTGACCTAGGCTGG....................................................................................... 25 3 0.67 0.67 0.33 - - - - - - 0.33 - - - - - - - - - - - - - - - - -
..............................TTTGGATCTCTGACATGG.......................................................................................................................................................................................................... 18 2 0.50 0.50 - - - - - - - - - - - - 0.50 - - - - - - - - - - - -
.............................GTTTGGATCTCTGACATGGAGG....................................................................................................................................................................................................... 22 2 0.50 0.50 - - - - - - - - - - - - - - - 0.50 - - - - - - - - -
..........................................................................................................................................................................................................GGAAACAACAGGATGGCAAGGGCAGGC..................... 27 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - 0.50 - - -
...........................................................................TGCAGATCTGAGGGACTGTGCAGGG...................................................................................................................................................... 25 2 0.50 0.50 - - - - - - - - - - - - 0.50 - - - - - - - - - - - -
..........................................................................TTGCAGATCTGAGGGACTGTGCAGGGT..................................................................................................................................................... 27 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - -
...............................................GAGGTTGGTGCAGGGAAC......................................................................................................................................................................................... 18 4 0.50 0.50 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TGCAGATCTGAGGGACTGTGCAGGGT..................................................................................................................................................... 26 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - -
...............................TTGGATCTCTGACATGGA......................................................................................................................................................................................................... 18 7 0.43 0.43 - - - - - - - - 0.14 - - - - - 0.14 - - - - - - - 0.14 - -
......................................TCTGACATGGAGGTTGG................................................................................................................................................................................................... 17 10 0.40 0.40 - - - - - - - - - 0.40 - - - - - - - - - - - - - - -
............................................ATGGAGGTTGGTGCAGGGAACAG....................................................................................................................................................................................... 23 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - 0.33 -
...........................................................................................................................................AGATGCTGTGCTGACCTAGGCTGG....................................................................................... 24 3 0.33 0.33 - - 0.33 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................TGAGGGACTGTGCAGGGTGGC.................................................................................................................................................. 21 3 0.33 0.33 - - - - - - - - - - - - - 0.33 - - - - - - - - - - -
...............................TTGGATCTCTGACATGGAGGTTGGTG................................................................................................................................................................................................. 26 4 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - 0.25
...............................................GAGGTTGGTGCAGGGAA.......................................................................................................................................................................................... 17 4 0.25 0.25 - - - - - - - - - - - - - - - 0.25 - - - - - - - - -
......................................................................................GGGACTGTGCAGGGTGGC.................................................................................................................................................. 18 5 0.20 0.20 - 0.20 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................AGGGACTGTGCAGGGTGG................................................................................................................................................... 18 5 0.20 0.20 - - - - - - - - - - - - - - - - - - - - - - 0.20 - -
.................................................................................................................................GCTGACCTGGAGATGCTG....................................................................................................... 18 6 0.17 0.17 - - - - - - - - - - - - - - - 0.17 - - - - - - - - -
...............................TTGGATCTCTGACATGGAGGTTGGT.................................................................................................................................................................................................. 25 6 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - 0.17 - - -
...........................................................................................................................................................................................................................AAGGGCAGGCTGGGTCTG............. 18 6 0.17 0.17 - - - - - - - - - - - - - - - 0.17 - - - - - - - - -
.................................................................................................................................GCTGACCTGGAGATGCTGTG..................................................................................................... 20 6 0.17 0.17 - - - - - - - - - - - - - 0.17 - - - - - - - - - - -
..................................GATCTCTGACATGGAGGT...................................................................................................................................................................................................... 18 7 0.14 0.14 - 0.14 - - - - - - - - - - - - - - - - - - - - - - -
...............................TTGGATCTCTGACATG........................................................................................................................................................................................................... 16 7 0.14 0.14 - - - - - - - - 0.14 - - - - - - - - - - - - - - - -
..................................GATCTCTGACATGGAGGTTG.................................................................................................................................................................................................... 20 7 0.14 0.14 - - - - - - - - - - - - - - - 0.14 - - - - - - - - -
...................................ATCTCTGACATGGAGGTTG.................................................................................................................................................................................................... 19 7 0.14 0.14 - - - - - - - 0.14 - - - - - - - - - - - - - - - - -
..........................................ACATGGAGGTTGGTGCAG.............................................................................................................................................................................................. 18 7 0.14 0.14 - - - - - - - 0.14 - - - - - - - - - - - - - - - - -
................................TGGATCTCTGACATGG.......................................................................................................................................................................................................... 16 8 0.12 0.12 - - - - - - - - - - 0.12 - - - - - - - - - - - - - -

Antisense strand
AGTTAGGCGTCTGTCCTGTTGAGCACTGCGTTTGGATCTCTGACATGGAGGTTGGTGCAGGGAACAGCGCCATCTTGCAGATCTGAGGGACTGTGCAGGGTGGCTGGTCGGGCGCTGAAGATGATTTGAGCTGACCTGGAGATGCTGTGCTGACCTAGGCTGGGCCACTGCCCCTGGGCACAGGTTTGAAGGGGAGAAGGTTGGAAACAACAGGATGGCAAGGGCAGGCTGGGTCTGCTGACTGCCTCTG


 Size Perfect hit Total Norm Perfect Norm mjTestesWT3()
Testes Data. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesWT4()
Testes Data. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR014234(GSM319958)
Ovary total. (ovary) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
..................................................................................................................................TGACCTGGAGATGCTGTGCTGACCTAa............................................................................................. 27 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.............TCCTGTTGAGCACTGCGTTT......................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.........TCTGTCCTGTTGAGCACT............................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................TCTGACATGGAGGTTGGTGCAGGGAACA........................................................................................................................................................................................ 28 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - 0.33 - - - -
..................................................................................................................................CTGACCTGGAGATGCTGTGCTGACCTA............................................................................................. 27 6 0.17 0.17 - - - - - - - 0.17 - - - - - - - - - - - - - - - - -