| Gene: BC028252 | ID: uc007qxc.1_intron_2_0_chr13_62860892_r.5p | SPECIES: mm9 |
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(7) OTHER.mut |
(2) PIWI.ip |
(4) PIWI.mut |
(26) TESTES |
| GCTGACAGGGGCCTTAGGGAATTGCCAGCGATCTACAACGTGGCGACATGGTGAGCGTGTGACCACTGCCCTTAACCGGAAGGAGCAGGGAGTTAAGCAGCTGGAGTCCGGGTGATGGGATACAGGGGACCAGCCCTGACTGTTCTTGGTTCCTCTTCAGGCAGCGGAGGGGGAAAGAGTGTTTGAGGTGACAAGACTTGGTTTTCAGGGATGTTTAGGGTTGCTGTTTAGTATTAAGACATTTGCCTAT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014235(GSM319959) 2 dpp total. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................TAACCGGAAGGAGCAGGGAGTTAAGC........................................................................................................................................................ | 26 | 4 | 3.00 | 3.00 | 1.75 | - | - | - | 0.25 | - | 0.50 | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | 0.25 | - | - | - | - |
| .......................................................................TTAACCGGAAGGAGCAGGGAGTTAAGC........................................................................................................................................................ | 27 | 4 | 2.75 | 2.75 | 1.00 | - | - | - | 1.50 | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................TAACCGGAAGGAGCAGGGAGTTAAGCAG...................................................................................................................................................... | 28 | 4 | 2.50 | 2.50 | - | - | - | 0.25 | - | 1.00 | 0.25 | - | - | - | - | 0.25 | - | 0.25 | - | - | - | - | - | - | - | - | 0.25 | - | 0.25 | - |
| ................................................................................................................................................................GCAGCGGAGGGGGAAAGA........................................................................ | 18 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................GCAGCGGAGGGGGAAAGAGT...................................................................... | 20 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................TAACCGGAAGGAGCAGGGAGTTAAGCA....................................................................................................................................................... | 27 | 4 | 2.00 | 2.00 | - | 0.50 | - | 0.75 | - | - | - | - | - | - | - | 0.25 | - | - | - | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TCCTCTTCAGGCAGCGGAGGGGGAAAGAG....................................................................... | 29 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TGTTCTTGGTTCCTCTTCAGGCAGCGG................................................................................... | 27 | 3 | 1.67 | 1.67 | - | - | - | - | - | - | 0.33 | 1.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................GACTTGGTTTTCAGGGATGTTTAGc............................... | 25 | c | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TGGTGAGCGTGTGACCACTGCCCTTAACt............................................................................................................................................................................. | 29 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................TAACCGGAAGGAGCAGGGAGTTAAtcag...................................................................................................................................................... | 28 | tcag | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGACAGGGGCCTTAGGGAATTGCCAt.............................................................................................................................................................................................................................. | 26 | t | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................TTGGTTCCTCTTCAGGCAGCGGAGa................................................................................ | 25 | a | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGACAGGGGCCTTAGGGAATTGCCAGC............................................................................................................................................................................................................................. | 27 | 5 | 0.60 | 0.60 | - | 0.20 | - | - | - | - | - | - | - | 0.20 | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TTAGGGAATTGCCAGCGATCTACAAC................................................................................................................................................................................................................... | 26 | 6 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - |
| ..............TAGGGAATTGCCAGCGATCTACAACGT................................................................................................................................................................................................................. | 27 | 4 | 0.50 | 0.50 | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - |
| ..................................................................TGCCCTTAACCGGAAGGAGCAGGGAGT............................................................................................................................................................. | 27 | 4 | 0.50 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................CGGAAGGAGCAGGGAGTTAAGC........................................................................................................................................................ | 22 | 4 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............TAGGGAATTGCCAGCGATCTACAACGTG................................................................................................................................................................................................................ | 28 | 4 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................TGACTGTTCTTGGTTCCTCTTCAGGCA....................................................................................... | 27 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TACAACGTGGCGACATGGTGAGCGTG............................................................................................................................................................................................... | 26 | 7 | 0.43 | 0.43 | 0.29 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TACAACGTGGCGACATGGTGAGCGT................................................................................................................................................................................................ | 25 | 7 | 0.43 | 0.43 | 0.43 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TTCTTGGTTCCTCTTCAGGCAGCGGA.................................................................................. | 26 | 5 | 0.40 | 0.40 | - | - | 0.20 | - | - | - | - | - | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................ACCGGAAGGAGCAGGGAGTTAAGCAG...................................................................................................................................................... | 26 | 4 | 0.25 | 0.25 | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................AACCGGAAGGAGCAGGGAGTTAAGCA....................................................................................................................................................... | 26 | 4 | 0.25 | 0.25 | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TTAACCGGAAGGAGCAGGGAGTTAAG......................................................................................................................................................... | 26 | 4 | 0.25 | 0.25 | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................TAACCGGAAGGAGCAGGGAGTTAAGCAGC..................................................................................................................................................... | 29 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - |
| ..................................................................TGCCCTTAACCGGAAGGAGCAGGGAG.............................................................................................................................................................. | 26 | 4 | 0.25 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................TGCCCTTAACCGGAAGGAGCAGGGA............................................................................................................................................................... | 25 | 4 | 0.25 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TTAACCGGAAGGAGCAGGGAGTTAA.......................................................................................................................................................... | 25 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - |
| .................................................................CTGCCCTTAACCGGAAGGAGCAGGGA............................................................................................................................................................... | 26 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - |
| ..........................................................................ACCGGAAGGAGCAGGGAG.............................................................................................................................................................. | 18 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - |
| .................GGAATTGCCAGCGATCTACAACGTGGCG............................................................................................................................................................................................................. | 28 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................TAACCGGAAGGAGCAGGGAGTTAAGCc....................................................................................................................................................... | 27 | c | 0.25 | 3.00 | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................GGAAGGAGCAGGGAGTTAAGCAGCT.................................................................................................................................................... | 25 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......GGGGCCTTAGGGAATTGCCAGCGATC......................................................................................................................................................................................................................... | 26 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TACAACGTGGCGACATGGTGAGCGTat.............................................................................................................................................................................................. | 27 | at | 0.14 | 0.43 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TACAACGTGGCGACATGGTGAGCGTa............................................................................................................................................................................................... | 26 | a | 0.14 | 0.43 | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TGCCAGCGATCTACAACGTGGCGACA.......................................................................................................................................................................................................... | 26 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |
| ......................TGCCAGCGATCTACAACGTGGCGACATG........................................................................................................................................................................................................ | 28 | 7 | 0.14 | 0.14 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TACAACGTGGCGACATGGTGAGCGTGT.............................................................................................................................................................................................. | 27 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................ACATGGTGAGCGTGTGACCACTGCCCT.................................................................................................................................................................................. | 27 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - | - | - | - | - | - | - |
| .......GGGGCCTTAGGGAATTGCC................................................................................................................................................................................................................................ | 19 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................TGACCACTGCCCTTAACCGGAAGGAGCA................................................................................................................................................................... | 28 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................TGGCGACATGGTGAGCGTGTGACC.......................................................................................................................................................................................... | 24 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TTCTTGGTTCCTCTTCAGG......................................................................................... | 19 | 9 | 0.11 | 0.11 | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................TGGCGACATGGTGAGCG................................................................................................................................................................................................. | 17 | 9 | 0.11 | 0.11 | - | - | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TGGTGAGCGTGTGACCACTGCCCTTA................................................................................................................................................................................ | 26 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................TCTACAACGTGGCGACATGGTGAGC.................................................................................................................................................................................................. | 25 | 10 | 0.10 | 0.10 | - | - | - | 0.10 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................TGCCCTTAACCGGAAGGAGCAGGG................................................................................................................................................................ | 24 | 10 | 0.10 | 0.10 | 0.10 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................TGTGACCACTGCCCTTAAC.............................................................................................................................................................................. | 19 | 15 | 0.07 | 0.07 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.07 | - | - | - | - |
| GCTGACAGGGGCCTTAGGGAATTGCCAGCGATCTACAACGTGGCGACATGGTGAGCGTGTGACCACTGCCCTTAACCGGAAGGAGCAGGGAGTTAAGCAGCTGGAGTCCGGGTGATGGGATACAGGGGACCAGCCCTGACTGTTCTTGGTTCCTCTTCAGGCAGCGGAGGGGGAAAGAGTGTTTGAGGTGACAAGACTTGGTTTTCAGGGATGTTTAGGGTTGCTGTTTAGTATTAAGACATTTGCCTAT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014235(GSM319959) 2 dpp total. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................TCTTCAGGCAGCGGtctt................................................................................... | 18 | tctt | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................GGGAAAGAGTGTTTttcc.................................................................. | 18 | ttcc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........GCCTTAGGGAATTGCCAGCGATCTACA..................................................................................................................................................................................................................... | 27 | 6 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - |
| ........................CCAGCGATCTACAACGTGGCGACA.......................................................................................................................................................................................................... | 24 | 7 | 0.57 | 0.57 | - | - | - | - | 0.57 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............AGGGAATTGCCAGCGATCTACAACGTGG............................................................................................................................................................................................................... | 28 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - |
| .........GGCCTTAGGGAATTGCCAGCGATCTA....................................................................................................................................................................................................................... | 26 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......GGGGCCTTAGGGAATTGCCAGCGATCTA....................................................................................................................................................................................................................... | 28 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TGCCAGCGATCTACAACGT................................................................................................................................................................................................................. | 19 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - |
| .......................GCCAGCGATCTACAACGT................................................................................................................................................................................................................. | 18 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................CAGGGATGTTTAGGGTTGCTGTTTAGTA................. | 28 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................GACCACTGCCCTTAACCGGAAGGAGCA................................................................................................................................................................... | 27 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................GTGACCACTGCCCTTAACCGGAAGGA...................................................................................................................................................................... | 26 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 | - | - | - | - | - | - |