| Gene: Ddx41 | ID: uc007qro.1_intron_14_0_chr13_55637407_r | SPECIES: mm9 |
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(3) OTHER.mut |
(5) PIWI.ip |
(2) PIWI.mut |
(19) TESTES |
| ACGAGGACTACGTACCCTATGTGCCGTTGCGGCAGCGCCGGCAGCTACTGGTGAGGGGCCGCATCCCTGGTGCAACGGCGACATGTCCCCGGCCGTCAGCGGGAGGGGGGATCTGGGGAGCTGTAGTCCTACCTTGGGTCGTGGTTCTGAGGAAGACCAGGGACTAGTGAACCTGAGTTCCGGACAGACGTGCGCCTCAGTGCACACGATCCCCTTCCCGGAAAAAGCCCTCCCGGGTGCTGTGCCCCCTCACCTGCTGGGTCCTGGGCTTGGCTCTGAGGGACACTGCTGGGACCTCAGCTCCAGAAGCTGCTGCAGCGAAGACGCAAGGGCGCTACGGAGGAAGAGCA ...............................................................................................................................................................((((((((.....)).))))))..((((..((((((....))))))...........(((((...........)))))..))))...((((((...((..(((.....)))..))..)))))).................................................................... ...............................................................................................................................................................160.........................................................................................................................284................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................TAGTGAACCTGAGTTCCGGACAGACGT............................................................................................................................................................... | 27 | 1 | 6.00 | 6.00 | - | 1.00 | - | - | - | 1.00 | 1.00 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| ....................................................................................................................................................................TAGTGAACCTGAGTTCCGGACAGACG................................................................................................................................................................ | 26 | 1 | 4.00 | 4.00 | - | - | - | 1.00 | - | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................TGAGTTCCGGACAGACGTGCGCCTCA....................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................TCTGAGGAAGACCAGGGACTAGTGAA................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................TCTGAGGAAGACCAGGGACTAGTGAAC.................................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................CTAGTGAACCTGAGTTCCGGACAGACG................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TGGGGAGCTGTAGTCCTACCTTGGGaa.................................................................................................................................................................................................................. | 27 | aa | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................GAGTTCCGGACAGACGTG.............................................................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................TGGGACCTCAGCTCCAGAAGCTGCTGCAGC............................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................................................................................................................TGAACCTGAGTTCCGGACAGACGTGCG............................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................TGAACCTGAGTTCCGGACAGACGTGCGC........................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................CTCCAGAAGCTGCTGCAGCGAAGACGC....................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................TCCAGAAGCTGCTGCAGCGAAGACGCA...................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................TCTGAGGAAGACCAGGGACTAGTGAACC................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................GACGCAAGGGCGCTACGGAGGAAGA... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................ACCTGAGTTCCGGACAGACGTGCGCCT......................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................AGTTCCGGACAGACGTGC............................................................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................................TGAACCTGAGTTCCGGACAGACGTGC............................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................TAGTGAACCTGAGTTCCGGACAGACGTG.............................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................TGCTGGGTCCTGGGCTTGGCTCTGAG...................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........................................................................................................................................................................................................................................................................................................................TGCAGCGAAGACGCAAGGGCGCTAC............ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CATCCCTGGTGCAACGGCGACATGT........................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................AGGGCGCTACGGAGcatg.... | 18 | catg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .............................................................................................................................................................................................................................................................................................................TCCAGAAGCTGCTGCAGCGAAGACGC....................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................CTGGGCTTGGCTCTGAGGGACACTGCTGG.......................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................TGGCTCTGAGGGACAC................................................................ | 16 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |
| ACGAGGACTACGTACCCTATGTGCCGTTGCGGCAGCGCCGGCAGCTACTGGTGAGGGGCCGCATCCCTGGTGCAACGGCGACATGTCCCCGGCCGTCAGCGGGAGGGGGGATCTGGGGAGCTGTAGTCCTACCTTGGGTCGTGGTTCTGAGGAAGACCAGGGACTAGTGAACCTGAGTTCCGGACAGACGTGCGCCTCAGTGCACACGATCCCCTTCCCGGAAAAAGCCCTCCCGGGTGCTGTGCCCCCTCACCTGCTGGGTCCTGGGCTTGGCTCTGAGGGACACTGCTGGGACCTCAGCTCCAGAAGCTGCTGCAGCGAAGACGCAAGGGCGCTACGGAGGAAGAGCA ...............................................................................................................................................................((((((((.....)).))))))..((((..((((((....))))))...........(((((...........)))))..))))...((((((...((..(((.....)))..))..)))))).................................................................... ...............................................................................................................................................................160.........................................................................................................................284................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................GGGAGCTGTAGTCCTACCTTGGGTC.................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ......................................................................................................................GTAGTCCTACCTccgc........................................................................................................................................................................................................................ | 16 | ccgc | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................ATGTCCCCGGCCGTCtcg............................................................................................................................................................................................................................................................. | 18 | tcg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .......................................................GGGCCGCATCCCTGGTGCAACGGCGACA........................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |