| Gene: Pdlim7 | ID: uc007qri.1_intron_2_0_chr13_55608986_r | SPECIES: mm9 |
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(7) OTHER.mut |
(3) PIWI.ip |
(20) TESTES |
| CTTTATCTGTCTATCTGTCTGTTTCCTTCACAGGTGCAGACCTCTGACAAGTTAGTGAGCCCTCTCTTCCTGTCACTTTCCTCCCTTTTGGCACTCTGGGTGGTGGCCCCTCCCTGTCCTGCCTGTCCTGACCTCCTCTGATTTACCCACCTACCCAGCCAAACCCTTTGCCTCACCCTCCTACCCCCCAACCCCCTGCTGTCACCAGAACCCGTGCACATCACGTCCTGGGAGGGGCAGCCCCTGGTGCCCACAGAACCAGAGGTTCTGAGCTCTGCCCTTCCCATAGACAGTTGCTCAGACAGCCGGTCCCCGATGCCAGCAAGCAGCGGCTGATGG ....................................................................................................................................................................................................................................((((((((((((.....(((.....(((((((...))))))).)))))))))))))))..................................................... .............................................................................................................................................................................................................................222................................................................289................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCCCATA................................................... | 22 | 1 | 15.00 | 15.00 | 5.00 | 1.00 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCCCATt................................................... | 22 | t | 7.00 | 7.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCCCAT.................................................... | 21 | 1 | 7.00 | 7.00 | - | 1.00 | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCCCA..................................................... | 20 | 1 | 5.00 | 5.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCCCATAGt................................................. | 24 | t | 4.00 | 1.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................TGAGCTCTGCCCTTCCCATAGtagt.............................................. | 25 | tagt | 4.00 | 0.00 | - | - | - | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................CCTGGGAGGGGCAGCCCCTGGT........................................................................................... | 22 | 1 | 3.00 | 3.00 | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................GTGCAGACCTCTGACAAGTTAGTGAG........................................................................................................................................................................................................................................................................................ | 26 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................TGCCAGCAAGCAGCGGCTGATGt | 23 | t | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCCCATAt.................................................. | 23 | t | 2.00 | 15.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................TGCCAGCAAGCAGCGGCTGATGGagt | 26 | agt | 2.00 | 0.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................TGCCAGCAAGCAGCGGCTGATGGatt | 26 | att | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .................................................................................................................................................................................................................................TCCTGGGAGGGGCAGCCCCTGG............................................................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCCCATAG.................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................CTGGGAGGGGCAGCCCCTGGTGC......................................................................................... | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................TTCTGAGCTCTGCCCTTCCCA..................................................... | 21 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................TTGCTCAGACAGCCGGTCCCCGATG..................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................................................................................................................................................................................TTCCCATAGACAGTTGgtgc....................................... | 20 | gtgc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..................................TGCAGACCTCTGACAAGg............................................................................................................................................................................................................................................................................................... | 18 | g | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCCCATAa.................................................. | 23 | a | 1.00 | 15.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................TGCCAGCAAGCAGCGGCTGATGGaat | 26 | aat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................TGCTCAGACAGCCGGTCCCCGATGCCcgc................ | 29 | cgc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCCC...................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................CTGGGAGGGGCAGCCCCTGGT........................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................TGAGCTCTGCCCTTCCCATAGtt................................................ | 23 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................TGCCAGCAAGCAGCGGCTGATGGattt | 27 | attt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..................................TGCAGACCTCTGACAAGgatg............................................................................................................................................................................................................................................................................................ | 21 | gatg | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................TGCCAGCAAGCAGCGGCTGATG. | 22 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................TTCTGAGCTCTGCCCTTCCCATAG.................................................. | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TCTGAGCTCTGCCCTTCC....................................................... | 18 | 4 | 0.25 | 0.25 | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTTTATCTGTCTATCTGTCTGTTTCCTTCACAGGTGCAGACCTCTGACAAGTTAGTGAGCCCTCTCTTCCTGTCACTTTCCTCCCTTTTGGCACTCTGGGTGGTGGCCCCTCCCTGTCCTGCCTGTCCTGACCTCCTCTGATTTACCCACCTACCCAGCCAAACCCTTTGCCTCACCCTCCTACCCCCCAACCCCCTGCTGTCACCAGAACCCGTGCACATCACGTCCTGGGAGGGGCAGCCCCTGGTGCCCACAGAACCAGAGGTTCTGAGCTCTGCCCTTCCCATAGACAGTTGCTCAGACAGCCGGTCCCCGATGCCAGCAAGCAGCGGCTGATGG ....................................................................................................................................................................................................................................((((((((((((.....(((.....(((((((...))))))).)))))))))))))))..................................................... .............................................................................................................................................................................................................................222................................................................289................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................CAGCCAAACCCTTttcg........................................................................................................................................................................... | 17 | ttcg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................CCAGCCAAACCCTTtcgc........................................................................................................................................................................... | 18 | tcgc | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |