| Gene: Ccdc90a | ID: uc007qgf.1_intron_0_0_chr13_43637099_r.3p | SPECIES: mm9 |
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(3) OTHER.mut |
(5) PIWI.ip |
(1) PIWI.mut |
(17) TESTES |
| AGAAGGAATACTTTATTGTTTTCTGGCCTTCAGTATGAAGTTTCCAGGTCCTGACTGGCCTGAGAATGGAAGAGCAGCATCCTTACTCAGTAGCCAGCATCCCTCCTCGCTTGCCCTCGAAGTGCCTTCTGACACCTGACACAGTACAAAAGAAACCCCCTTCAGGGGCTAACAGTGTTCTCCATTGTTCTTTCTTACAGGGTCTGTGTTTACGTGCCTAACAGTGGCTCTGGGATTTTATCGCCTGTGG .......................................................(((((((((...(((.........)))...)))))..))))...........(((((.......)))))..((((.....(((...)))......))))................................................................................................ .......................................................56...................................................................................................157........................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................TGAGAATGGAAGAGCAGCATCCTTACT................................................................................................................................................................... | 27 | 1 | 12.00 | 12.00 | 4.00 | 2.00 | - | 2.00 | - | - | - | 2.00 | - | 2.00 | - | - | - | - | - | - | - |
| ............................................................TGAGAATGGAAGAGCAGCATCCTTAC.................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | 1.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................TGGAAGAGCAGCATCCTTACTCAGTAG............................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................CTGGCCTGAGAATGGAAGAGC............................................................................................................................................................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ............................................................TGAGAATGGAAGAGCAGCATCCTTA..................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................TCTGACACCTGACACAGTACAAAAGA................................................................................................. | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TAACAGTGGCTCTGGGATTTTATCGC...... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ............................................................TGAGAATGGAAGAGCAGCA........................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................CCTAACAGTGGCTCTGGGATTTTATCGC...... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TTACGTGCCTAACAGTGGCTCTGGGA............... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..............................................................................................................................................................................................TTTCTTACAGGGTCTGTGTTTACGTGC................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..................................................................TGGAAGAGCAGCATCCTTACTCAGTAGCC........................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..................................................................................TTACTCAGTAGCCAGCATCCCTCCTaaa............................................................................................................................................ | 28 | aaa | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TGAAGTTTCCAGGTCCTGACTGGCCTGA........................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...................................................................................TACTCAGTAGCCAGCtcag.................................................................................................................................................... | 19 | tcag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...............................................................................................................TGCCCTCGAAGTGCCTTCTGACACCTGA............................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................TGAGAATGGAAGAGCAGCATCCTTAt.................................................................................................................................................................... | 26 | t | 1.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................GACTGGCCTGAGAATGGAAGAGCAGC............................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................TACAGGGTCTGTGTTTACGTGCCTAA............................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................TGGCCTGAGAATGGAAGAGCAGCATCCTT...................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................TTGTTCTTTCTTACAGGGTCTGTGTTT....................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TCCTGACTGGCCTGAGAATGGAAGA................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGACTGGCCTGAGAATGGAAGAGCAGC............................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................TGGCTCTGGGATTTTATCGCCTGTG. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................TGACACAGTACAAAAGAAACCCCCTTC....................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| AGAAGGAATACTTTATTGTTTTCTGGCCTTCAGTATGAAGTTTCCAGGTCCTGACTGGCCTGAGAATGGAAGAGCAGCATCCTTACTCAGTAGCCAGCATCCCTCCTCGCTTGCCCTCGAAGTGCCTTCTGACACCTGACACAGTACAAAAGAAACCCCCTTCAGGGGCTAACAGTGTTCTCCATTGTTCTTTCTTACAGGGTCTGTGTTTACGTGCCTAACAGTGGCTCTGGGATTTTATCGCCTGTGG .......................................................(((((((((...(((.........)))...)))))..))))...........(((((.......)))))..((((.....(((...)))......))))................................................................................................ .......................................................56...................................................................................................157........................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................GCATCCCTCCTCGCTaaa........................................................................................................................................... | 18 | aaa | 4.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - |
| .............................................................................................CATCCCTCCTCGCTgaga........................................................................................................................................... | 18 | gaga | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............TTTTCTGGCCTTCAgttt.......................................................................................................................................................................................................................... | 18 | gttt | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................GCATCCCTCCTCGCTaga........................................................................................................................................... | 18 | aga | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |