(1)
OTHER.ip
(4)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(30)
TESTES

Sense strand
ACAGGCATAAACCTTCCACTCTTGAACAAAGCAGCTGCTTTTTAAAAGCGGTAATTGCTTCTTTACCTTTTATTTCTTTTGTAAATGAAGCTTTTCTTTTAAAATGTGACTTTAAAGTGTTGTCTATTGCATAAACAGTTGACACTCACTTACTGTAATGAGAAGATTGTTCTGCATGGGAAGTGGGCCGTGCAGATCTCTGTATGTTCTCAGTATGCATCACTAGATAATAAAGTCTTTTGTGAACAAG
..............................................................................................((((((...((...((....(((((.((((.((((......)))).))))..)))))...)).)).))))))....................................................................................
............................................................................................93.....................................................................................180....................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT1()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
mjTestesWT3()
Testes Data. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
.....................................................................................................................................................TTACTGTAATGAGAAGATTGTTCTGCA.......................................................................... 27 1 10.00 10.00 2.00 3.00 3.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................TACTGTAATGAGAAGATTGTTCTGCA.......................................................................... 26 1 9.00 9.00 2.00 3.00 2.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................GCTGCTTTTTAAAAGCG........................................................................................................................................................................................................ 17 1 9.00 9.00 - - - 6.00 - 1.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................GATCTCTGTATGTTCTCAGTATGCATC............................. 27 1 6.00 6.00 - - - - - - 6.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......TAAACCTTCCACTCTTGAACAAAGCAGC....................................................................................................................................................................................................................... 28 1 6.00 6.00 - - 1.00 - 1.00 1.00 - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................TGAACAAAGCAGCTGCTTTTTAAAAGCG........................................................................................................................................................................................................ 28 1 4.00 4.00 - - - - - 4.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........AACCTTCCACTCTTGAACAAAGCAGC....................................................................................................................................................................................................................... 26 1 3.00 3.00 - - - - - - - - - - 1.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - -
.....................................................................................................................................................TTACTGTAATGAGAAGATTGTTCTGC........................................................................... 26 1 3.00 3.00 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................TACTGTAATGAGAAGATTGTTCTGCAT......................................................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................GAAGATTGTTCTGCATGGGAAGTGGGCt............................................................. 28 t 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TGTAATGAGAAGATTGTTCTGCATGG....................................................................... 26 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.......TAAACCTTCCACTCTTGAACAAAGCAG........................................................................................................................................................................................................................ 27 1 2.00 2.00 - - - - - - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - -
.......TAAACCTTCCACTCTTGAACAAAGCAGCTGC.................................................................................................................................................................................................................... 31 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.................................................................................................................................................................GAAGATTGTTCTGCATGGGAAGTGGGC.............................................................. 27 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................CTTACTGTAATGAGAAGATTGTTCTGCA.......................................................................... 28 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................CACTTACTGTAATGAGAAGATTGTTCTGC........................................................................... 29 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.........AACCTTCCACTCTTGAACAAAGCAGCTG..................................................................................................................................................................................................................... 28 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........ACCTTCCACTCTTGAACAAAGCAGCTttt................................................................................................................................................................................................................... 29 ttt 2.00 0.00 - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
......................TGAACAAAGCAGCTGCTTTTTAAAAGCGag...................................................................................................................................................................................................... 30 ag 2.00 4.00 - - - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................TACTGTAATGAGAAGATTGTTCTGCATG........................................................................ 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................AATGTGACTTTAAAGTGTTGTCTATT.......................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................................................TTGCATAAACAGTTGACACTCACTTt.................................................................................................. 26 t 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TGAGAAGATTGTTCTGCATGGGAAGTGG................................................................ 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................ACTTACTGTAATGAGAAGATTGTTCTGC........................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......ATAAACCTTCCACTCTTGAACAAAGCAGC....................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........AACCTTCCACTCTTGAACAAAGCAGCTGCT................................................................................................................................................................................................................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................TTGAACAAAGCAGCTGCTTTTTAAAAGCG........................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...............................................................................................................................TGCATAAACAGTTGACACTCACTTACT................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......TAAACCTTCCACTCTTGAACAAAGCAGCTG..................................................................................................................................................................................................................... 30 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......TAAACCTTCCACTCTTGAACAAAGCAGCT...................................................................................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....CATAAACCTTCCACTCTTGAACAAAGCAG........................................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................GAAGATTGTTCTGCATGGGAAGTGGGac............................................................. 28 ac 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....CATAAACCTTCCACTCTTGAACAAAGC.......................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............CCACTCTTGAACAAAGCAGCTGC.................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..........................................................................................................................................................GTAATGAGAAGATTGTTCTGCATGG....................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TTTAAAATGTGACTTTAAAGTGTTGT............................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..........ACCTTCCACTCTTGAACAAAGCAGCTG..................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.....................................................................................................................................................TTACTGTAATGAGAAGATTGTTCTGCATG........................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.....................................................................TTATTTCTTTTGTAAATGAAG................................................................................................................................................................ 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..............................................................................................................................................................TGAGAAGATTGTTCTGCATGGGAAGTG................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TGAGAAGATTGTTCTGCATGGGAAGTt................................................................. 27 t 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................TGCATAAACAGTTGACACTCACT.................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................TAAACAGTTGACACTCACTTACTGTAATG.......................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................GCTGCTTTTTAAAAGCt........................................................................................................................................................................................................ 17 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TGTAATGAGAAGATTGTTCTGCATGGGt..................................................................... 28 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.....................................................................................................................................................TTACTGTAATGAGAAGATTGTTCTGCAT......................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................TACTGTAATGAGAAGATTGTTCTGC........................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................CTTACTGTAATGAGAAGATTGTTCTGCATG........................................................................ 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
...........................................................................................................................................................TAATGAGAAGATTGTTCTGCATGGGAAGT.................................................................. 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................CTGTAATGAGAAGATTGTTCTGCA.......................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
................................................................ACCTTTTATTTCTTTTGTAAATGAAGC............................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
........AAACCTTCCACTCTTGAACAAAGCAGCTGC.................................................................................................................................................................................................................... 30 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................TGGGAAGTGGGCCGTGCAGATCTCT................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
................................................................................................................................................................AGAAGATTGTTCTGCATGGGAAGTGG................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........AACCTTCCACTCTTGAACAAAGCAGCTGC.................................................................................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................GAAGATTGTTCTGCATGGGAAGTGGGCCG............................................................ 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................GACACTCACTTACTGTAATGAGAAGATT.................................................................................. 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................GGGAAGTGGGCCGTGCAGATCTCT................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
........................................................................................................TGTGACTTTAAAGTGTTGTCTATTGCAT...................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
ACAGGCATAAACCTTCCACTCTTGAACAAAGCAGCTGCTTTTTAAAAGCGGTAATTGCTTCTTTACCTTTTATTTCTTTTGTAAATGAAGCTTTTCTTTTAAAATGTGACTTTAAAGTGTTGTCTATTGCATAAACAGTTGACACTCACTTACTGTAATGAGAAGATTGTTCTGCATGGGAAGTGGGCCGTGCAGATCTCTGTATGTTCTCAGTATGCATCACTAGATAATAAAGTCTTTTGTGAACAAG
..............................................................................................((((((...((...((....(((((.((((.((((......)))).))))..)))))...)).)).))))))....................................................................................
............................................................................................93.....................................................................................180....................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT1()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
mjTestesWT3()
Testes Data. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
.............................................................CCTTTTATTTCTTTTagta.......................................................................................................................................................................... 19 agta 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -