| Gene: Cdc2l5 | ID: uc007pob.1_intron_1_0_chr13_17811460_r.3p | SPECIES: mm9 |
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(2) OTHER.mut |
(5) PIWI.ip |
(2) PIWI.mut |
(16) TESTES |
| TCAATACATTTTGTCTTTAGTAATAACAGGCCCTGGACAGCCGTTAAACCACAGTGAATTGGCAATTCTTCTAAACCTACTACAATCTAAATCAAGTGTTAATATGGCTGATTTTGTCCAAGTGTTGAACATTAAGGTAAACTCTGAGACTCAACAGCAGCTAAATAAAATAAACCTTCCTGCTGGAATTTTGGCAACAGGTGAAAAACAGACAGATCCATCAACACCACAACAGGAGTCTTCAAAATCA ..........................................................................................................................................................((((((...................))))))....((((....))))................................................. .................................................................................................................................130.............................................................................210...................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................TGGAATTTTGGCAACAGGTGAAAAACAG....................................... | 28 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................TGAAAAACAGACAGATCCATCAACACCA..................... | 28 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................AGGTAAACTCTGAGACTCAACAGCAGC......................................................................................... | 27 | 1 | 3.00 | 3.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................TGAAAAACAGACAGATCCATCAACACC...................... | 27 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................GGTAAACTCTGAGACTCAACAGCAGC......................................................................................... | 26 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................TGAGACTCAACAGCAGCTAAATAAAATA.............................................................................. | 28 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TCTGAGACTCAACAGCAGC......................................................................................... | 19 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................AGGTAAACTCTGAGACTCAACAGCAGCT........................................................................................ | 28 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................ACAGATCCATCAACACCA..................... | 18 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................AAGGTAAACTCTGAGACTCAACAGCAGCTA....................................................................................... | 30 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TGGAATTTTGGCAACAGGTGAAAAAaa........................................ | 27 | aa | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................TGCTGGAATTTTGGCAACAGGTGAAA............................................ | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................TAAGGTAAACTCTGAGACTCAACAG............................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...........................................................................................................................................................................................................AAAAACAGACAGATCCATCAACACCAC.................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TAAACTCTGAGACTCAACAGCAGCTAA...................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...................................................................................................................................................................................CTGCTGGAATTTTGGCAACAG.................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...................................................................................................................................TTAAGGTAAACTCTGAGACTCAACAGCAGC......................................................................................... | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................TGAAAAACAGACAGATCCATCAACACCAC.................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TAAACTCTGAGACTCAACAGCAGCTA....................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TGGACAGCCGTTAAACCACAGTGAATTG............................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................TGCTGGAATTTTGGCAACAGGTt............................................... | 23 | t | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................CTGGAATTTTGGCAACAGGTGAAAAAC......................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................GGTAAACTCTGAGACTCAACAGCAGCTA....................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................CTGGAATTTTGGCAACAGGTGAAAAACA........................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................TGCTGGAATTTTGGCAACAGGTGAAt............................................ | 26 | t | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................ATTAAGGTAAACTCTGAGACTCAACAGC............................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....................................................................................................................................TAAGGTAAACTCTGAGACTCAACAGCAG.......................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................TAAACCACAGTGAATTGGCAATTCTTC................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TTGTCCAAGTGTTGAACA....................................................................................................................... | 18 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................................................................................................................................TGAAAAACAGACAGATCCATCAACACCACA................... | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TGAACATTAAGGTAAACTCTGAGACTC.................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .......................................................................................................................................................................................TGGAATTTTGGCAACAGGTGAAAAACAGt...................................... | 29 | t | 1.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................TGAAAAACAGACAGATCCATCAACAC....................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TCAATACATTTTGTCTTTAGTAATAACAGGCCCTGGACAGCCGTTAAACCACAGTGAATTGGCAATTCTTCTAAACCTACTACAATCTAAATCAAGTGTTAATATGGCTGATTTTGTCCAAGTGTTGAACATTAAGGTAAACTCTGAGACTCAACAGCAGCTAAATAAAATAAACCTTCCTGCTGGAATTTTGGCAACAGGTGAAAAACAGACAGATCCATCAACACCACAACAGGAGTCTTCAAAATCA ..........................................................................................................................................................((((((...................))))))....((((....))))................................................. .................................................................................................................................130.............................................................................210...................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................................................TCCATCAACACCACAACcct................. | 20 | cct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |