(5)
OTHER.mut
(2)
OVARY
(5)
PIWI.ip
(4)
PIWI.mut
(29)
TESTES

Sense strand
CGGGTAAAGATGGCAGAGCGCGGTTACAGCTTCTCGCTGACTACATTCAGGTATTCGGGGGACCCGCAGGTTCCATGCGTCGCAGATCACAGGAGCGCCCCAGACATGGTCCCGTGTGTCGGACCTGGCTGGTGTTTGCGTAGGAGTGCACGGTGACGGAGCTGGACTCGTAGCTTTGCAGAGTCATGTTCCGTGCCAGGCCTGGGCCCTGGCTGAGGCCGGCCGTGTTGCGGGCCGAGGGACGGGAGGC
.............................................................................((((((....(((....((((.((((.((.(((((........))))))).)))).....))))....)))....))))))............................................................................................
..................................................................67..........................................................................................159.........................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT2()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
.......................................................................TCCATGCGTCGCAGATCACAGGAGC.......................................................................................................................................................... 25 1 18.00 18.00 8.00 - - 3.00 2.00 - - 1.00 - 1.00 - - - 1.00 - - - - - - - - 1.00 - 1.00 - - - - - -
......................................................................TTCCATGCGTCGCAGATCACAGGAGC.......................................................................................................................................................... 26 1 7.00 7.00 3.00 - - - 1.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - 1.00
.................................................................................................................................TGGTGTTTGCGTAGGAGTGCACGGT................................................................................................ 25 1 6.00 6.00 1.00 - - 1.00 1.00 1.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TGGTGTTTGCGTAGGAGTGCACGGTG............................................................................................... 26 1 6.00 6.00 - - - - - - 2.00 - - - 1.00 - 1.00 1.00 - 1.00 - - - - - - - - - - - - - - -
..................................................................................................................TGTGTCGGACCTGGCTGGTGTTTGC............................................................................................................... 25 1 4.00 4.00 - 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........TGGCAGAGCGCGGTTACAGCTTCTC....................................................................................................................................................................................................................... 25 1 4.00 4.00 - - - - - - - 2.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
.........ATGGCAGAGCGCtcgc................................................................................................................................................................................................................................. 16 tcgc 4.00 0.00 - - - - 1.00 - - - - 1.00 - - - - - - - 1.00 - - 1.00 - - - - - - - - - -
.................................................................................................................................................................................................................................TGTTGCGGGCCGAGGGACGG..... 20 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................AGGTATTCGGGGGACCCG........................................................................................................................................................................................ 18 1 3.00 3.00 - - - - - - - - 1.00 - - - - - - - - 1.00 - - 1.00 - - - - - - - - - -
.............................................................................................................................................................GGAGCTGGACTCGTAGCTTTGCAGAGT.................................................................. 27 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TGCGTCGCAGATCACAGGAGCGCCCCA.................................................................................................................................................... 27 1 3.00 3.00 - - 1.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........TGGCAGAGCGCGGTTACAGCTTCTCG...................................................................................................................................................................................................................... 26 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................TTCCATGCGTCGCAGATCACAGGAGCGCC....................................................................................................................................................... 29 1 2.00 2.00 - - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TGCGTAGGAGTGCACGGTGACGGAGCT....................................................................................... 27 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TGCGTCGCAGATCACAGGAGCGCCCCAGA.................................................................................................................................................. 29 1 2.00 2.00 - - - - - - - - - - - - - - - - 1.00 - 1.00 - - - - - - - - - - - -
.......................................................................................................................................TTGCGTAGGAGTGCACGGTGACGGAG......................................................................................... 26 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................TGCAGAGTCATGTTCCGTGCCAGGCC................................................ 26 1 2.00 2.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........TGGCAGAGCGCGGTTACAGCTTCTCGC..................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................TTGCGTAGGAGTGCACGGTGACGGAGC........................................................................................ 27 1 2.00 2.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....TAAAGATGGCAGAGCGCGGTTACAGt............................................................................................................................................................................................................................ 26 t 2.00 0.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................TTTGCAGAGTCATGTTCCGTGCCAGccc................................................ 28 ccc 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................TTGCGTAGGAGTGCACGGTGACGGA.......................................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TAGGAGTGCACGGTGACGGAGCT....................................................................................... 23 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TGCGTCGCAGATCACAGGAGCGCCCCAGAC................................................................................................................................................. 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................CAGGTATTCGGGGGACCCG........................................................................................................................................................................................ 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................................................TGCGTAGGAGTGCACGGTGACGGAGC........................................................................................ 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................GGAGTGCACGGTGACGGAGCTGGgc................................................................................... 25 gc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.......................................................................TCCATGCGTCGCAGATCACAGcagc.......................................................................................................................................................... 25 cagc 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
................................................AGGTATTCGGGGGACCCGC....................................................................................................................................................................................... 19 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........TGGCAGAGCGCGGTTACAGCTTCTCa...................................................................................................................................................................................................................... 26 a 1.00 4.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............GAGCGCGGTTACAGCTTCTCGCTGAC................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................TGACTACATTCAGGTATTCGGGGGA............................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................ATTCAGGTATTCGGGGGACCCGCAG..................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................TCGGACCTGGCTGGTGTTTGCGTA............................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................TGCGTCGCAGATCACAGGA............................................................................................................................................................ 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.............................................................................................................................TGGCTGGTGTTTGCGTAGGAGTGC..................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.............................................................................................................................................................................CTTTGCAGAGTCATGTTCCGTGCCAGGCC................................................ 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....AAAGATGGCAGAGCGCGGTTACAGCTT.......................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....TAAAGATGGCAGAGCGCGGT.................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..........TGGCAGAGCGCGGTTACAGCTcct........................................................................................................................................................................................................................ 24 cct 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................................................................................GACCTGGCTGGTGTTTGCGTAGGA......................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
................................................................................................................................................................................TGCAGAGTCATGTTCCGTGCCAGccct............................................... 27 ccct 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............AGAGCGCGGTTACAGCTTCTCGCTGACT................................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............AGAGCGCGGTTACAGCTTCTC....................................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TGGTGTTTGCGTAGGAGTGCACGGTt............................................................................................... 26 t 1.00 6.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............AGAGCGCGGTTACAGCTTCTCG...................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................TTCCATGCGTCGCAGATCACAGGAGCGC........................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTATTCGGGGGACCCGCAGGTT.................................................................................................................................................................................. 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..................................................................................................................TGTGTCGGACCTGGCTGGTGTTTGCGT............................................................................................................. 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................TCACAGGAGCGCCCCAGACATGGTCCC......................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................................................................................................................TGGACTCGTAGCTTTGCAGAGTCATGT............................................................. 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................TGCAGAGTCATGTTCCGTGCCAGGCCT............................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........TGGCAGAGCGCGGTTACAGCTTCT........................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....AAAGATGGCAGAGCGCGGTTA................................................................................................................................................................................................................................ 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...........................................................................TGCGTCGCAGATCACAGGAGCGCCCC..................................................................................................................................................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................ACGGTGACGGAGCTG...................................................................................... 15 2 0.50 0.50 - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CGGGTAAAGATGGCAGAGCGCGGTTACAGCTTCTCGCTGACTACATTCAGGTATTCGGGGGACCCGCAGGTTCCATGCGTCGCAGATCACAGGAGCGCCCCAGACATGGTCCCGTGTGTCGGACCTGGCTGGTGTTTGCGTAGGAGTGCACGGTGACGGAGCTGGACTCGTAGCTTTGCAGAGTCATGTTCCGTGCCAGGCCTGGGCCCTGGCTGAGGCCGGCCGTGTTGCGGGCCGAGGGACGGGAGGC
.............................................................................((((((....(((....((((.((((.((.(((((........))))))).)))).....))))....)))....))))))............................................................................................
..................................................................67..........................................................................................159.........................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT2()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
............................GCTTCTCGCTGACTACATTCAGGTATTC.................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -