| Gene: Brf1 | ID: uc007pfn.1_intron_1_0_chr12_114199493_r | SPECIES: mm9 |
|
|
(4) OTHER.mut |
(1) PIWI.ip |
(15) TESTES |
| TGAGGCCTCTGCTGTCTGCCCAGCCGGCGAAGAAGGCAGCCGTGGGAGAGGTATGTTGTCCCACACAGCCAGGCCGGGGCCTCAGGATCACAGGCTGCCATCAGGCTTGGCAGGGAGAGGCCCAGCTGGTTGCTGCTGCAATGCTGGCTGGGCTCCAGGAGAGAATCCTGAAGCCCGGAGAGTGAGGGCTTCTGGATCACAAAAGTGGAGCAGGCAGGTGGTAAAGGCCAGTTATATGCTGTTATTCTGGGACTGAGGGTGAGCTAATCTCCACTGTGGACTAGAGTGGGCGAAGGCTAGATTCCATACCACAGTTGATAACTTTGGAAAAAGGAGGGCTGGGACTTCTTAGCCCAGCTCAGATGTGGGTCAGGAACAGGAACTGTGAGGGGTGCCCATGCCCAGACTGAGAGGACCTGAGGATCCCTTAGAGTCAGGAGGATTGCCACCCTCTGCTCTCATTCCGGAGCCCTGCCCTCTCTCTCTTCCAGGCCTTACTCTTAAGTTCTCCTGCCTTGGGAGCAGAGCCAATCAAGCCATC |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................................................................................................................................................................................................................CAGACTGAGAGGACCTGAG........................................................................................................................ | 19 | 1 | 7.00 | 7.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TATGTTGTCCCACACAGCCAGGCtggg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | tggg | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TGCTGCAATGCTGGCTGGGCTCCAGt.............................................................................................................................................................................................................................................................................................................................................................................................. | 26 | t | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................TGGGACTGAGGGTGAGCTAATCTCC............................................................................................................................................................................................................................................................................. | 25 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................TGATAACTTTGGAAAAAGGAGGGCTG........................................................................................................................................................................................................ | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 |
| .........................................................................................................................................GCAATGCTGGCTGGGCTCCAGGAGA........................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................AGCTAATCTCCACTGTGGA..................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................CAGGAACAGGAACTGTGAGGGG..................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................TCTGGGACTGAGGGTGAGCTAATCTC.............................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................CAGTTGATAACTTTGGAAAAAGGAGGGC.......................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...........................CGAAGAAGGCAGCCGTGGGAGAGGcctt...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | cctt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....................................................................................................................................................................................................................................................TTCTGGGACTGAGGGTGAGC..................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............TGTCTGCCCAGCCGGCGAAGAAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............TCTGCCCAGCCGGCGAAGAAGGCAGCCGTt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 30 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................TCTGGATCACAAAAGTGGAGC.......................................................................................................................................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCTTAAGTTCTCCTGCCTTGGGAGCAG................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................................CTGGATCACAAAAGTGGAGCAGGCA..................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..........................................................................................................................................................................................................................................................................................................................TTGATAACTTTGGAAAA.................................................................................................................................................................................................................. | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - |
| TGAGGCCTCTGCTGTCTGCCCAGCCGGCGAAGAAGGCAGCCGTGGGAGAGGTATGTTGTCCCACACAGCCAGGCCGGGGCCTCAGGATCACAGGCTGCCATCAGGCTTGGCAGGGAGAGGCCCAGCTGGTTGCTGCTGCAATGCTGGCTGGGCTCCAGGAGAGAATCCTGAAGCCCGGAGAGTGAGGGCTTCTGGATCACAAAAGTGGAGCAGGCAGGTGGTAAAGGCCAGTTATATGCTGTTATTCTGGGACTGAGGGTGAGCTAATCTCCACTGTGGACTAGAGTGGGCGAAGGCTAGATTCCATACCACAGTTGATAACTTTGGAAAAAGGAGGGCTGGGACTTCTTAGCCCAGCTCAGATGTGGGTCAGGAACAGGAACTGTGAGGGGTGCCCATGCCCAGACTGAGAGGACCTGAGGATCCCTTAGAGTCAGGAGGATTGCCACCCTCTGCTCTCATTCCGGAGCCCTGCCCTCTCTCTCTTCCAGGCCTTACTCTTAAGTTCTCCTGCCTTGGGAGCAGAGCCAATCAAGCCATC |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCTCTCTCTCTTac...................................................... | 19 | ac | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGGTTGCTGCTGCAATat............................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | at | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |