| Gene: Siva | ID: uc007pew.1_intron_0_0_chr12_113883296_f.3p | SPECIES: mm9 |
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(5) OTHER.mut |
(4) PIWI.ip |
(20) TESTES |
| CAGGCAGGTGATCTGTCCTGGAGTCCTGTGACCAGTCCTGGGAATGAATGCCTCATCGTGAGCCTTTAGTCTAGTGCTCCAGGTGGCTGATAGATAGGTTGCCAAAAGGACTCGGTTGCAGGGGAAGAAGGGTGCCTGTCACCCTCGTGTTCTTCCAGTGTCCTTCCAATGCTCACAGCCTCGGTGTTTTCTCCTCACAGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................TGCCAAAAGGACTCGGTTGCAGGGG.............................................................................................................................. | 25 | 1 | 8.00 | 8.00 | 5.00 | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................AAAGGACTCGGTTGCAGGGGAAGA.......................................................................................................................... | 24 | 1 | 8.00 | 8.00 | 6.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TAGATAGGTTGCCAAAAGGACTCGGTT..................................................................................................................................... | 27 | 1 | 5.00 | 5.00 | - | 3.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................TAGGTTGCCAAAAGGACTCGGTTGC................................................................................................................................... | 25 | 1 | 4.00 | 4.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .................................................................................................................................................................................................................................TTGTTCATCGTGCATGAGATCTGTG | 25 | 2 | 3.50 | 3.50 | - | 0.50 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 0.50 | 0.50 | - |
| .........................................................................................................AAGGACTCGGTTGCAGGGGAAGAAG........................................................................................................................ | 25 | 1 | 3.00 | 3.00 | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................AAAAGGACTCGGTTGCAGGGG.............................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................TGCCAAAAGGACTCGGTTGCAGGGGA............................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................AAGGACTCGGTTGCAGGGGAAGAAGGG...................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..........................................................................................................AGGACTCGGTTGCAGGGGAAGAAGG....................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................TTTTCTCCTCACAGGCCTTCCCAGG....................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................TTTAGTCTAGTGCTCCAGGTGGCTGAT............................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................CAAAAGGACTCGGTTGCAGG................................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................AAGGACTCGGTTGCAGGGGAAGAAGG....................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TAGATAGGTTGCCAAAAGGACTCGGT...................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................TGCCAAAAGGACTCGGTTGCAGGGGAt............................................................................................................................ | 27 | t | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................................................................TGCCAAAAGGACTCGGTTGCAGGG............................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................TGGGAATGAATGCCTCATCGTGAGCCTT........................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................ACTCGGTTGCAGGGGAAGAAGGGTG.................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................TGCAGGGGAAGAAGGGTGCCTGTaga............................................................................................................ | 26 | aga | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TAGTGCTCCAGGTGGCTGATAGATAG......................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................AAGGACTCGGTTGCAGGGGAAGA.......................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................TCGCTTGTTCATCGTGCATGAGATCTG.. | 27 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................TTGTTCATCGTGCATGAGAT..... | 20 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................TGTTCATCGTGCATGAGATCTGTG | 24 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| .............................................................................................................................................................................................................................TCGCTTGTTCATCGTGCATGAGATCTGT. | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - |
| .................................................................................................................................................................................................................................TTGTTCATCGTGCATGAGATCTGTGt | 26 | t | 0.50 | 3.50 | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................TTGTTCATCGTGCATGAGATCTGTGgt | 27 | gt | 0.50 | 3.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - |
| CAGGCAGGTGATCTGTCCTGGAGTCCTGTGACCAGTCCTGGGAATGAATGCCTCATCGTGAGCCTTTAGTCTAGTGCTCCAGGTGGCTGATAGATAGGTTGCCAAAAGGACTCGGTTGCAGGGGAAGAAGGGTGCCTGTCACCCTCGTGTTCTTCCAGTGTCCTTCCAATGCTCACAGCCTCGGTGTTTTCTCCTCACAGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................AGAAGGGTGCCTGTCAggat............................................................................................................. | 20 | ggat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |