| Gene: 6720458F09Rik | ID: uc007pdo.1_intron_1_0_chr12_112917174_f.5p | SPECIES: mm9 |
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(3) OTHER.mut |
(1) OVARY |
(6) PIWI.ip |
(2) PIWI.mut |
(17) TESTES |
| GATCACCATGATGCTGGAGCTGCGTCCCGGTTCTGTGGTCTGTGAATCAGGTGAGCTCCTCTGGTATGAGCTCAGATAAGACGGTTTGCAGCCGATCCTTCCTGCAGTTGTGCGCTGAACTACTTGGTTCTTCTAGCTTTTATTTAGCAACTCCGCTTGCAAGGGAGGGTGTGGCTGCAGGGAGTGAAGCCAGAAGCAGTACTAGCTGCTGTCATCGAAATGGCAGCTGATGGGAGCTAACCTGGGTTGG ...........................................................((((((....)).)))).....((((.....)))).((((((((((((....(((..(((((....))))).....(((.......))).....)))))))).)))))))................................................................................. ........................................................57...............................................................................................................170.............................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT3() Testes Data. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................TGGTATGAGCTCAGATAAGACGGTTT................................................................................................................................................................... | 26 | 1 | 11.00 | 11.00 | - | 2.00 | - | 1.00 | 1.00 | 2.00 | 1.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - |
| .............................................................TGGTATGAGCTCAGATAAGACGGTT.................................................................................................................................................................... | 25 | 1 | 8.00 | 8.00 | 3.00 | - | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .............................................................TGGTATGAGCTCAGATAAGACG....................................................................................................................................................................... | 22 | 1 | 5.00 | 5.00 | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................TGGTATGAGCTCAGATAAGACGGTTTGCA................................................................................................................................................................ | 29 | 1 | 4.00 | 4.00 | 1.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................TGGTATGAGCTCAGATAAGACGGTTTGC................................................................................................................................................................. | 28 | 1 | 3.00 | 3.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................TGGTATGAGCTCAGATAAGACGGTTTG.................................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....ACCATGATGCTGGAGCTG.................................................................................................................................................................................................................................... | 18 | 1 | 3.00 | 3.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................TGAGCTCAGATAAGACGGTTTGCAGCC............................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................TGGTATGAGCTCAGATAAGACGGTTTGCAGt.............................................................................................................................................................. | 31 | t | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................TCTGGTATGAGCTCAGATAAGACGGT..................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................TTCTGTGGTCTGTGAATCAGGTGAGC.................................................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................TATGAGCTCAGATAAGACGGTTTGCAGC.............................................................................................................................................................. | 28 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................TATGAGCTCAGATAAGACGGTTTGC................................................................................................................................................................. | 25 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................TGAGCTCAGATAAGACGGTTTGCAG............................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................TGGTATGAGCTCAGATAAGACGGTTTGa................................................................................................................................................................. | 28 | a | 1.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TGATGCTGGAGCTGCGTCCCcgtc.......................................................................................................................................................................................................................... | 24 | cgtc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..........................................................CTCTGGTATGAGCTCAGATAAGACGG...................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TCCTTCCTGCAGTTGTGCGCTGAACTA................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................CGGTTCTGTGGTCTGTGAATCAGGca..................................................................................................................................................................................................... | 26 | ca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ................................................................TATGAGCTCAGATAAGACGGTTTGCA................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................TCTGTGGTCTGTGAATCAGGTGAGCTC................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................................................................TTCCTGCAGTTGTGCGCTGAACTACT.............................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................TCTGGTATGAGCTCAGATAAGACGGTTT................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................TGCGTCCCGGTcgga....................................................................................................................................................................................................................... | 15 | cgga | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TGTGGTCTGTGAATCAGGTGAGCTC................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ............................................................................................................................................TATTTAGCAACTCCGCTTGCAAGGGA.................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................TGAGCTCAGATAAGACGGTTTGCAGCCGA........................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| GATCACCATGATGCTGGAGCTGCGTCCCGGTTCTGTGGTCTGTGAATCAGGTGAGCTCCTCTGGTATGAGCTCAGATAAGACGGTTTGCAGCCGATCCTTCCTGCAGTTGTGCGCTGAACTACTTGGTTCTTCTAGCTTTTATTTAGCAACTCCGCTTGCAAGGGAGGGTGTGGCTGCAGGGAGTGAAGCCAGAAGCAGTACTAGCTGCTGTCATCGAAATGGCAGCTGATGGGAGCTAACCTGGGTTGG ...........................................................((((((....)).)))).....((((.....)))).((((((((((((....(((..(((((....))))).....(((.......))).....)))))))).)))))))................................................................................. ........................................................57...............................................................................................................170.............................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT3() Testes Data. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................CGTCCCGGTTCtggc......................................................................................................................................................................................................................... | 15 | tggc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |