| Gene: Ckb | ID: uc007pdn.1_intron_1_0_chr12_112908226_r | SPECIES: mm9 |
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(3) OTHER.mut |
(1) PIWI.ip |
(1) PIWI.mut |
(10) TESTES |
| GGGGCAACATGAAGGAAGTGTTCACCCGATTCTGCACCGGCCTCACTCAGGTCAGGCCTGGGCATTCCCCAGGGCTTCCTCACTAGGGGCGTTGGTGCTGGGGAGGGATCAGGGGCAGATCAGAGCCCACATCTCCCAGGGTCCGTAGGGCTTCCGGCCAGGCTTCCTTCTCTTAACTCTCCCTTCTCCACCTTCAGATCGAAACTCTCTTCAAGTCCAAGAACTATGAGTTCATGTGGAATCCTCA ..................................................................................................((((((((((....((((........)))).........((((.((....(((.....))).))..))))...........))))))).)))......................................................... .................................................................................................98.................................................................................................197................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................TTCCCCAGGGCTTCCTCACTAGGGGCGTTGGTGCTGGGGAGGGATCAGGGGC................................................................................................................................... | 52 | 1 | 58.00 | 58.00 | 58.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................TATGAGTTCATGTGGAATC.... | 19 | 2 | 5.00 | 5.00 | - | 5.00 | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................CAAGTCCAAGAACTATGAGTTCATGTa......... | 27 | a | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - |
| .................................................................................................................................................................................................TCAGATCGAAACTCTCTTCAAGTCCAAGAA........................ | 30 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | 0.50 | - | - |
| ......ACATGAAGGAAGTGTTCACCCGAT......................................................................................................................................................................................................................... | 24 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | 0.20 |
| GGGGCAACATGAAGGAAGTGTTCACCCGATTCTGCACCGGCCTCACTCAGGTCAGGCCTGGGCATTCCCCAGGGCTTCCTCACTAGGGGCGTTGGTGCTGGGGAGGGATCAGGGGCAGATCAGAGCCCACATCTCCCAGGGTCCGTAGGGCTTCCGGCCAGGCTTCCTTCTCTTAACTCTCCCTTCTCCACCTTCAGATCGAAACTCTCTTCAAGTCCAAGAACTATGAGTTCATGTGGAATCCTCA ..................................................................................................((((((((((....((((........)))).........((((.((....(((.....))).))..))))...........))))))).)))......................................................... .................................................................................................98.................................................................................................197................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................................................TCCCTTCTCCACCTTCAGATCGAA............................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................................................AGAGCCCACATCTCCCAGGGTCCGTA.................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - |
| ......................................................................................................................................................CTTCCGGCCAGGCTTCCTTCTCTTA........................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................................................................................................................................................GATCGAAACTCTaag....................................... | 15 | aag | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................................................................................CCCACATCTCCCAGGGTCCGTA.................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................AACTCTCTTCAAGTCCAA........................... | 18 | 4 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | 0.50 | - |
| ...........................................................................................................................................................................................................ACTCTCTTCAAGTCCAAGAACTA..................... | 23 | 3 | 0.33 | 0.33 | - | - | 0.33 | - | - | - | - | - | - | - |