| Gene: Gtf2a1 | ID: uc007oks.1_intron_7_0_chr12_92825242_r.3p | SPECIES: mm9 |
|
|
(3) OTHER.mut |
(5) PIWI.ip |
(1) PIWI.mut |
(24) TESTES |
| CTCTGATATCCTCCTGTCTTTGCCTCCAGAGTGATAAGCCTGGCTTAGGATTGTAGTATCTTTAATTAAAGTCACAATTTAAAATAAATTTTAGATAGTTGGCCAAATGGCTTGTATTTAATAATTATTTAATTATTTCTCAAAGCCTACTATAACATTTTGAAATCAGTCTTTTATTGAATCTTATTTTTCCTTTAAAGCCTAAATTGTATAGATCTGTGATTGAAGATGTTATTAATGACGTACGAGA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | mjTestesWT4() Testes Data. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................TTTAATAATTATTTAATTATTTCTCAAAGCCTACTATAACATTTTGAAATCA.................................................................................. | 52 | 1 | 34.00 | 34.00 | 34.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................AAATTGTATAGATCTGTGATTGAAGA..................... | 26 | 3 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TATAGATCTGTGATTGAAGATGTTAT............... | 26 | 3 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGTATAGATCTGTGATTGAAGATGTT................. | 26 | 3 | 1.00 | 1.00 | - | - | - | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - |
| ............................................................................................................................................................................................................AATTGTATAGATCTGTGATTGAAGATG................... | 27 | 3 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 0.33 | 0.33 | - | - | - | - | 0.33 | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................ATCTGTGATTGAAGATGTTATTAATGttt....... | 29 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................TAGATCTGTGATTGAAGATGTTATTAATGA......... | 30 | 3 | 0.67 | 0.67 | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| .........................................................................................................................................................................................................................TGTGATTGAAGATGTTATTAATGACGTAC.... | 29 | 3 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - |
| ..........................................................................................................................................................................................................TAAATTGTATAGATCTGTGATTGAAGA..................... | 27 | 3 | 0.67 | 0.67 | - | 0.33 | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................TAGATCTGTGATTGAAGATGTTATTAATG.......... | 29 | 3 | 0.67 | 0.67 | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TCTGTGATTGAAGATGTTATTAATGAC........ | 27 | 3 | 0.67 | 0.67 | - | - | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TGTGATTGAAGATGTTATTAATGACGTA..... | 28 | 3 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | 0.33 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TAAATTGTATAGATCTGTGATTGAAGATGT.................. | 30 | 3 | 0.67 | 0.67 | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - |
| .......................................................................................................................................................................................................................TCTGTGATTGAAGATGTTATTA............. | 22 | 4 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................TAGATCTGTGATTGAAGATGTTATTAAT........... | 28 | 3 | 0.33 | 0.33 | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................AAATTGTATAGATCTGTGATTGAAGATGTT................. | 30 | 3 | 0.33 | 0.33 | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TGTGATTGAAGATGTTATTAATGACG....... | 26 | 3 | 0.33 | 0.33 | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TAAATTGTATAGATCTGTGATTGAAG...................... | 26 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................TAGATCTGTGATTGAAGATGTTATTAATGt......... | 30 | t | 0.33 | 0.67 | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................AATTGTATAGATCTGTGATTGAAGATGTT................. | 29 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGTATAGATCTGTGATTGAAGATG................... | 24 | 3 | 0.33 | 0.33 | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................GATCTGTGATTGAAGATGTTATTAATGACGT...... | 31 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TATAGATCTGTGATTGAAGATGTTATT.............. | 27 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................ATTGTATAGATCTGTGATTGAAGATGTTAT............... | 30 | 3 | 0.33 | 0.33 | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGTATAGATCTGTGATTGAAGATGTTATT.............. | 29 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - |
| ...........................................................................................................................................................................................................AAATTGTATAGATCTGTGATTGAAGATt................... | 28 | t | 0.33 | 0.33 | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................TAGATCTGTGATTGAAGATGTTATT.............. | 25 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGTATAGATCTGTGATTGAAGATGTTAT............... | 28 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGTATAGATCTGTGATTGAAGATGTTA................ | 27 | 3 | 0.33 | 0.33 | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................AAATTGTATAGATCTGTGATTGAAGAT.................... | 27 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - |
| CTCTGATATCCTCCTGTCTTTGCCTCCAGAGTGATAAGCCTGGCTTAGGATTGTAGTATCTTTAATTAAAGTCACAATTTAAAATAAATTTTAGATAGTTGGCCAAATGGCTTGTATTTAATAATTATTTAATTATTTCTCAAAGCCTACTATAACATTTTGAAATCAGTCTTTTATTGAATCTTATTTTTCCTTTAAAGCCTAAATTGTATAGATCTGTGATTGAAGATGTTATTAATGACGTACGAGA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | mjTestesWT4() Testes Data. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................ACATTTTGAAATCActgg.................................................................................. | 18 | ctgg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............TGTCTTTGCCTCCAGAGTGAT....................................................................................................................................................................................................................... | 21 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - |